ggKbase home page

B_1_S1_Biohub_coassembly_k141_5056568

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_5056568_1
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(72..410)
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AQV4_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05111.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
B_1_S1_Biohub_coassembly_k141_5056568_2
R_WOR_2_48_11, WOR-2, Bacteria

Not on your lists

comp(558..1157)
DNA (600bp) protein (200aa)
Transcriptional regulator Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJY0_9BURK
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
B_1_S1_Biohub_coassembly_k141_5056568_3
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

1618..1824
DNA (207bp) protein (69aa)
Cold shock protein Tax=Desulfobacter postgatei 2ac9 RepID=I5AYH7_9DELT
cold-shock DNA-binding protein family protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
B_1_S1_Biohub_coassembly_k141_5056568_4
unknown

Not on your lists

comp(2268..4091)
DNA (1824bp) protein (608aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_5056568_5
unknown

Not on your lists

comp(4092..5900)
DNA (1809bp) protein (603aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_5056568_6
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

6190..6396
DNA (207bp) protein (69aa)
cold-shock DNA-binding domain-containing protein
Cold-shock DNA-binding domain protein bin=GWA2_Elusimicrobia_69_24 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
B_1_S1_Biohub_coassembly_k141_5056568_7
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6656..7117)
DNA (462bp) protein (154aa)
Uncharacterized protein {ECO:0000313|EMBL:EXI76640.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
B_1_S1_Biohub_coassembly_k141_5056568_8
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(7325..8119)
DNA (795bp) protein (265aa)
RNA polymerase sigma factor Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R3D5_ISOPI
RNA polymerase sigma-38 subunit RpoS
Tax=RBG_16_RIF03_38_10_curated
B_1_S1_Biohub_coassembly_k141_5056568_9
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(8301..8699)
DNA (399bp) protein (133aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C4745
hypothetical protein
Tax=CG_Arma_02
B_1_S1_Biohub_coassembly_k141_5056568_10
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

comp(8753..10216)
DNA (1464bp) protein (488aa)
Uncharacterized protein bin=GWF2_Lentisphaerae_49_21 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
B_1_S1_Biohub_coassembly_k141_5056568_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(10381..11784)
DNA (1404bp) protein (468aa)
putative undecaprenyl-phosphate glucose phosphotransferase (EC:2.7.8.-)
Undecaprenyl-phosphate glucose phosphotransferase bin=GWC2_Deltaproteobacteria_56_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
Tax=RBG_16_Nitrospirae_64_22_curated
B_1_S1_Biohub_coassembly_k141_5056568_12
unknown

Not on your lists

comp(12707..13510)
DNA (804bp) protein (268aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0003176D00
B_1_S1_Biohub_coassembly_k141_5056568_13
unknown

Not on your lists

comp(13513..13986)
DNA (474bp) protein (158aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_5056568_14
unknown

Not on your lists

comp(13986..14240)
DNA (255bp) protein (85aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_5056568_15
unknown

Not on your lists

comp(14379..15182)
DNA (804bp) protein (268aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_5056568_16
unknown

Not on your lists

comp(15179..15346)
DNA (168bp) protein (56aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_5056568_17
unknown

Not on your lists

15476..15787
DNA (312bp) protein (104aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_5056568_18
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15938..17122
DNA (1185bp) protein (395aa)
Putative uncharacterized protein Tax=uncultured Planctomycetales bacterium HF0130_29M04 RepID=E7C3F0_9BACT
phospholipid/glycerol acyltransferase
Tax=RBG_16_Planctomycetes_64_12_curated
B_1_S1_Biohub_coassembly_k141_5056568_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(17202..19193)
DNA (1992bp) protein (664aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase Tax=Rheinheimera sp. A13L RepID=F7NZ42_9GAMM bin=16ft_combo_ws3_JS1 species=Rheinheimera sp. A13L genus=Rheinheimera taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
peptidase S9 prolyl oligopeptidase
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 19 items

View Taxonomy