ggKbase home page

B_1_S1_Biohub_coassembly_k141_3928359

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_3928359_1
unknown

Not on your lists

395..2509
DNA (2115bp) protein (705aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3928359_2
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2776..3357
DNA (582bp) protein (194aa)
RDD domain-containing protein Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3R1_9GAMM
RDD domain-containing protein {ECO:0000313|EMBL:EHQ52448.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
putative membrane protein/domain protein
B_1_S1_Biohub_coassembly_k141_3928359_3

Not on your lists

3370..4260
DNA (891bp) protein (297aa)
Hypothetical conserved protein Tax=uncultured candidate division OP1 bacterium RepID=H5S8W8_9BACT
Marine sediment metagenome DNA, contig: S03H2_S12091 {ECO:0000313|EMBL:GAH71665.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_3928359_4
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

4353..6350
DNA (1998bp) protein (666aa)
Protein of unknown function (DUF2723)
Polyprenyl-phospho-glycoside--protein O-glycosyltransferase DUF2723 membrane protein, putative bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tax=RBG_16_Chloroflexi_56_8_curated
B_1_S1_Biohub_coassembly_k141_3928359_5

Not on your lists

comp(6374..7648)
DNA (1275bp) protein (425aa)
Marine sediment metagenome DNA, contig: S06H3_S21344 {ECO:0000313|EMBL:GAI48295.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_3928359_6
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

7766..9439
DNA (1674bp) protein (558aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
Dihydroxy-acid dehydratase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3Y6_SPHTD
B_1_S1_Biohub_coassembly_k141_3928359_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9550..9801
DNA (252bp) protein (84aa)
Ferredoxin 7Fe (Seven-iron ferredoxin) bin=GWD2_Deltaproteobacteria_55_8 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
4Fe-4S ferredoxin
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
B_1_S1_Biohub_coassembly_k141_3928359_8
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9890..11830
DNA (1941bp) protein (647aa)
aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase {ECO:0000313|EMBL:AEG16614.1}; EC=4.2.1.3 {ECO:0000313|EMBL:AEG16614.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
Aconitate hydratase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CM98_DESK7
B_1_S1_Biohub_coassembly_k141_3928359_9
unknown

Not on your lists

comp(11896..12099)
DNA (204bp) protein (68aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3928359_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

12313..13896
DNA (1584bp) protein (528aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK67_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69689.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
B_1_S1_Biohub_coassembly_k141_3928359_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13850..15451
DNA (1602bp) protein (534aa)
hypothetical protein
id=14627849 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
B_1_S1_Biohub_coassembly_k141_3928359_12
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

15584..16120
DNA (537bp) protein (179aa)
Copper resistance D Tax=Nitrolancetus hollandicus Lb RepID=I4EDD8_9CHLR
Copper resistance D {ECO:0000313|EMBL:CCF82700.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
B_1_S1_Biohub_coassembly_k141_3928359_13

Not on your lists

16150..16629
DNA (480bp) protein (160aa)
Cytochrome c-type biogenesis protein ccmE (Cytochrome c maturation protein E) (Heme chaperone ccmE) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFW8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKM23361.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ccmE; cytochrome c-type biogenesis protein CcmE
B_1_S1_Biohub_coassembly_k141_3928359_14
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

16636..18633
DNA (1998bp) protein (666aa)
Cytochrome c assembly protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CC98_THET1
cytochrome c assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:ACZ42413.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
B_1_S1_Biohub_coassembly_k141_3928359_15
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

18623..19105
DNA (483bp) protein (161aa)
Cytochrome C biogenesis protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3N2_SPHTD
cytochrome C biogenesis protein
Cytochrome C biogenesis protein {ECO:0000313|EMBL:ACZ38849.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
B_1_S1_Biohub_coassembly_k141_3928359_16
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists

19102..19464
DNA (363bp) protein (121aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RBG_13_Chloroflexi_54_9_curated
B_1_S1_Biohub_coassembly_k141_3928359_17
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

Not on your lists

19461..20675
DNA (1215bp) protein (405aa)
Uncharacterized protein Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KXS5_THERP
hypothetical protein
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_3928359_18
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

Not on your lists

20675..21409
DNA (735bp) protein (245aa)
Heme exporter protein CcmA Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3N0_SPHTD
heme exporter protein CcmA
Tax=RBG_13_Chloroflexi_52_14_curated
B_1_S1_Biohub_coassembly_k141_3928359_19

Not on your lists

21360..22145
DNA (786bp) protein (262aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK59452.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
atm:ANT_19400 ccmB; heme exporter protein CcmB; K02194 heme exporter protein B bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
ccmB; heme exporter protein CcmB
B_1_S1_Biohub_coassembly_k141_3928359_20
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

22170..22868
DNA (699bp) protein (233aa)
Cytochrome c assembly protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CE04_THET1
cytochrome c assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:ACZ41160.1}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
B_1_S1_Biohub_coassembly_k141_3928359_21
unknown

Not on your lists

22895..23065
DNA (171bp) protein (57aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3928359_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23148..24002
DNA (855bp) protein (285aa)
Cytochrome c biogenesis protein, transmembrane region Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV45_RUBXD
cytochrome c biogenesis protein, transmembrane region
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
B_1_S1_Biohub_coassembly_k141_3928359_23
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

24033..24590
DNA (558bp) protein (186aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI0003812041
Redoxin domain-containing protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
B_1_S1_Biohub_coassembly_k141_3928359_24
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(24768..26144)
DNA (1377bp) protein (459aa)
Adenylosuccinate lyase Tax=Pelosinus fermentans JBW45 RepID=I9NJQ7_9FIRM
adenylosuccinate lyase
Adenylosuccinate lyase {ECO:0000313|EMBL:AJQ25534.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans JBW45.;"
B_1_S1_Biohub_coassembly_k141_3928359_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26171..26617)
DNA (447bp) protein (149aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI00035C3263
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
B_1_S1_Biohub_coassembly_k141_3928359_26
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26614..27045)
DNA (432bp) protein (144aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI000370B265
Uncharacterized protein {ECO:0000313|EMBL:EEG78562.1}; Flags: Precursor;; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
DMT family permease
B_1_S1_Biohub_coassembly_k141_3928359_27
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(27244..27690)
DNA (447bp) protein (149aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037A1C7F
acyl dehydratase MaoC
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
B_1_S1_Biohub_coassembly_k141_3928359_28
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(27690..28130)
DNA (441bp) protein (147aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000362ED21
Tax=RBG_16_Chloroflexi_68_14_curated
B_1_S1_Biohub_coassembly_k141_3928359_29
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28293..29630)
DNA (1338bp) protein (446aa)
MmgE/PrpD family protein Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SHR9_NOCSJ
MmgE/PrpD family protein
MmgE/PrpD family protein {ECO:0000313|EMBL:ABL81354.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
B_1_S1_Biohub_coassembly_k141_3928359_30
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29650..30984)
DNA (1335bp) protein (445aa)
MmgE/PrpD family protein Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CPS5_DESK7
MmgE/PrpD family protein
MmgE/PrpD family protein {ECO:0000313|EMBL:AEG14934.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
Displaying items 1-30 of 71 in total

View Taxonomy