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B_1_S1_Biohub_coassembly_k141_1816001

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_1816001_1
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

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2..370
DNA (369bp) protein (123aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B Tax=Dehalococcoides ethenogenes (strain 195) RepID=GATB_DEHE1
Tax=RBG_16_Chloroflexi_58_8_curated
B_1_S1_Biohub_coassembly_k141_1816001_2
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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371..589
DNA (219bp) protein (73aa)
Preprotein translocase, SecG subunit Tax=Dehalococcoides mccartyi RepID=A5FPJ9_DEHSB
secG; preprotein translocase, SecG subunit
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_1816001_3
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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600..1415
DNA (816bp) protein (272aa)
hypothetical protein; K09134 hypothetical protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_1816001_4

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1412..1537
DNA (126bp) protein (42aa)
Marine sediment metagenome DNA, contig: S06H3_L04558 {ECO:0000313|EMBL:GAI10521.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
B_1_S1_Biohub_coassembly_k141_1816001_5

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1700..3241
DNA (1542bp) protein (514aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-] bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Uncharacterized protein {ECO:0000313|EMBL:KKN01722.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
1,4-dihydroxy-2-naphthoateoctaprenyltransferase
B_1_S1_Biohub_coassembly_k141_1816001_6
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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3467..4639
DNA (1173bp) protein (391aa)
Sodium/hydrogen exchanger Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D5U4_METSW
sodium/hydrogen exchanger
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1816001_7
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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comp(4866..6374)
DNA (1509bp) protein (503aa)
Cysteine--tRNA ligase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K309_DEHLB
cysteinyl-tRNA synthetase
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_1816001_8

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comp(6403..6888)
DNA (486bp) protein (162aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0H3_THEOJ
Marine sediment metagenome DNA, contig: S12H4_C02748 {ECO:0000313|EMBL:GAI59807.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_1816001_9
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(6914..7600)
DNA (687bp) protein (229aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K311_DEHLB
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1816001_10

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comp(7825..8178)
DNA (354bp) protein (118aa)
Cupin 2 domain-containing protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F661_CONWI
Marine sediment metagenome DNA, contig: S03H2_S09512 {ECO:0000313|EMBL:GAH72418.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cupin
B_1_S1_Biohub_coassembly_k141_1816001_11
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

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comp(8181..9611)
DNA (1431bp) protein (477aa)
deh:cbdb_A474 cbdbA474; phosphoglucomutase; K01840 phosphomannomutase [EC:5.4.2.8] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
phosphoglucomutase/phosphomannomutase
Tax=RBG_13_Chloroflexi_51_18_curated
B_1_S1_Biohub_coassembly_k141_1816001_12
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(9824..10552)
DNA (729bp) protein (243aa)
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1816001_13
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

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comp(10593..11804)
DNA (1212bp) protein (404aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase Tax=Dehalococcoides mccartyi RepID=METK_DEHSB
Tax=RBG_16_Chloroflexi_56_11_curated
B_1_S1_Biohub_coassembly_k141_1816001_14
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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comp(11947..13209)
DNA (1263bp) protein (421aa)
dev:DhcVS_454 ahcY; S-adenosylhomocysteine hydrolase; K01251 adenosylhomocysteinase [EC:3.3.1.1] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
adenosylhomocysteinase (EC:3.3.1.1)
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_1816001_15
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(13414..15003)
DNA (1590bp) protein (530aa)
Uncharacterized protein Tax=Dehalococcoides mccartyi GY50 RepID=V5QAB4_9CHLR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII57658.1}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi CG1.;"
B_1_S1_Biohub_coassembly_k141_1816001_16
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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comp(15107..16363)
DNA (1257bp) protein (419aa)
Polynucleotide adenylyltransferase region Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3A5_DEHLB
polynucleotide adenylyltransferase-domain containing protein
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_1816001_17
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

Not on your lists

16545..17195
DNA (651bp) protein (217aa)
putative cytoplasmic protein; K09126 hypothetical protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
cytoplasmic protein
Tax=RBG_16_Chloroflexi_56_11_curated
B_1_S1_Biohub_coassembly_k141_1816001_18
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17700..18002)
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YWA7_METPS
hypothetical protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
B_1_S1_Biohub_coassembly_k141_1816001_19
uncultured marine crenarchaeote E48-1C, Crenarchaeota, Archaea

Not on your lists

comp(18025..19899)
DNA (1875bp) protein (625aa)
Aldehyde ferredoxin oxidoreductase bin=GWC2_Methylomirabilis_70_16 species=uncultured marine crenarchaeote E48-1C genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Aldehyde ferredoxin oxidoreductase {ECO:0000313|EMBL:ADP09456.1}; species="Archaea; Crenarchaeota; miscellaneous Crenarchaeota group; environmental samples.;" source="uncultured marine crenarchaeote E48-1C.;"
aldehyde:ferredoxin oxidoreductase
B_1_S1_Biohub_coassembly_k141_1816001_20
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20407..21729)
DNA (1323bp) protein (441aa)
major facilitator superfamily protein bin=GWA2_Methylomirabilis_73_35 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
B_1_S1_Biohub_coassembly_k141_1816001_21

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comp(21957..22856)
DNA (900bp) protein (300aa)
6-phosphogluconate dehydrogenase NAD-binding Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NP97_ROSCS
Marine sediment metagenome DNA, contig: S12H4_L01896 {ECO:0000313|EMBL:GAI77411.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
6-phosphogluconate dehydrogenase
B_1_S1_Biohub_coassembly_k141_1816001_22
unknown

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22975..23094
DNA (120bp) protein (40aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1816001_23
R_RIF_OD1_06_34_9, RIF-OD1-6, Parcubacteria, Bacteria

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comp(23184..23600)
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0B8Y5_9EURY
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_34_9_curated
Displaying 23 items

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