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B_1_S1_Biohub_coassembly_k141_2674776

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_2674776_1

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1..849
DNA (849bp) protein (283aa)
chy:CHY_0733 fdhA; NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Marine sediment metagenome DNA, contig: S06H3_C00164 {ECO:0000313|EMBL:GAH94408.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
4Fe-4S ferredoxin
B_1_S1_Biohub_coassembly_k141_2674776_2
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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966..2123
DNA (1158bp) protein (386aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037DB210
formate dehydrogenase, alpha subunit
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2674776_3
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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2136..3764
DNA (1629bp) protein (543aa)
chy:CHY_0733 fdhA; NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Formate dehydrogenase subunit alpha
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2674776_4
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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4125..4964
DNA (840bp) protein (280aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00035EF25F
GltD-like oxidoreductase, FAD/NAD(P)-binding, PyrK
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_2674776_5
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

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5102..6496
DNA (1395bp) protein (465aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000382B5FF
gltA; glutamate synthase
Tax=RBG_13_Chloroflexi_50_10_curated
B_1_S1_Biohub_coassembly_k141_2674776_6
unknown

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comp(6505..6735)
DNA (231bp) protein (77aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_2674776_7
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6818..7348)
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Ochrobactrum intermedium 229E RepID=U4V1A1_9RHIZ
Tax=RBG_16_Gamma2_64_11_curated
B_1_S1_Biohub_coassembly_k141_2674776_8
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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7606..10206
DNA (2601bp) protein (867aa)
deb:DehaBAV1_1029 DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
mutS; DNA mismatch repair protein MutS
Tax=RBG_13_Chloroflexi_46_14_curated
B_1_S1_Biohub_coassembly_k141_2674776_9
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

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comp(10207..10896)
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=Cylindrospermum stagnale PCC 7417 RepID=K9X5G9_9NOST
Protein of unknown function (DUF2743)
Uncharacterized protein {ECO:0000313|EMBL:AFZ27905.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
B_1_S1_Biohub_coassembly_k141_2674776_10
unknown

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comp(11143..11403)
DNA (261bp) protein (87aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_2674776_11

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comp(11666..12184)
DNA (519bp) protein (173aa)
Rubrerythrin/rubredoxin Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z9E8_DEHE1
Marine sediment metagenome DNA, contig: S01H4_S01593 {ECO:0000313|EMBL:GAG85400.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rubrerythrin/rubredoxin
B_1_S1_Biohub_coassembly_k141_2674776_12
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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comp(12293..13150)
DNA (858bp) protein (286aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Dehalococcoides ethenogenes (strain 195) RepID=ISPE_DEHE1
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_2674776_13
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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comp(13156..14046)
DNA (891bp) protein (297aa)
Ribosomal RNA small subunit methyltransferase A Tax=Dehalococcoides sp. (strain VS) RepID=D2BGQ4_DEHSV
ksgA; dimethyladenosine transferase
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_2674776_14
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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comp(14049..15644)
DNA (1596bp) protein (532aa)
Uncharacterized protein Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K2B7_DEHLB
hypothetical protein
Tax=RBG_16_Chloroflexi_60_22_curated
B_1_S1_Biohub_coassembly_k141_2674776_15
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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comp(15641..16303)
DNA (663bp) protein (221aa)
Uncharacterized protein Tax=Dehalococcoides mccartyi RepID=M1QUI2_9CHLR
hypothetical protein
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_2674776_16
unknown

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comp(17199..18134)
DNA (936bp) protein (312aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_2674776_17
RBG_13_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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comp(18138..19337)
DNA (1200bp) protein (400aa)
NurA domain protein Tax=Dehalococcoides sp. (strain GT) RepID=D3SHI9_DEHSG
nuclease
Tax=RBG_13_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_2674776_18
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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19712..20974
DNA (1263bp) protein (421aa)
dly:Dehly_1402 peptidase M16 domain-containing protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
peptidase M16 domain-containing protein
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_2674776_19
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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comp(21181..22806)
DNA (1626bp) protein (542aa)
sti:Sthe_0845 chaperonin GroEL; K04077 chaperonin GroEL bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
chaperonin GroEL
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_2674776_20
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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comp(22845..23153)
DNA (309bp) protein (103aa)
groES; 10 kDa chaperonin; K04078 chaperonin GroES bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
groS; chaperonin, 10 kDa
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_2674776_21

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23903..24379
DNA (477bp) protein (159aa)
Hit family protein Tax=Pyrococcus furiosus RepID=I6URJ0_9EURY
Marine sediment metagenome DNA, contig: S06H3_S09842 {ECO:0000313|EMBL:GAI46115.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hit family protein
B_1_S1_Biohub_coassembly_k141_2674776_trna_1
unknown

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comp(24385..24457)
DNA (73bp)
transferRNA Glu
B_1_S1_Biohub_coassembly_k141_2674776_22
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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24505..25107
DNA (603bp) protein (201aa)
Hypothetical membrane protein Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N6D2_ANATU
hypothetical protein
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2674776_23

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comp(25139..25474)
DNA (336bp) protein (112aa)
Marine sediment metagenome DNA, contig: S01H1_S32826 {ECO:0000313|EMBL:GAG28658.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_2674776_24
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(25572..25820)
DNA (249bp) protein (83aa)
Nitrogen-fixing NifU domain protein bin=CD_OP8_4m species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
nitrogen-fixing NifU domain-containing protein
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2674776_25
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(25915..27264)
DNA (1350bp) protein (450aa)
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase Tax=Dehalococcoides mccartyi BTF08 RepID=M1QZD1_9CHLR
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2674776_26

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comp(27286..27741)
DNA (456bp) protein (152aa)
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z883_DEHE1
Marine sediment metagenome DNA, contig: S12H4_S05531 {ECO:0000313|EMBL:GAJ00754.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit
B_1_S1_Biohub_coassembly_k141_2674776_27

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comp(27892..28176)
DNA (285bp) protein (95aa)
Marine sediment metagenome DNA, contig: S06H3_L01174 {ECO:0000313|EMBL:GAI17857.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 28 items

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