ggKbase home page

S_p1_S3_coassembly_k141_1481922

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1481922_1
RIFOXYD1_FULL_OD1_46_19_curated, Parcubacteria, Bacteria

Not on your lists

comp(1..609)
DNA (609bp) protein (203aa)
seg 22..40 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Tax=RIFOXYD1_FULL_OD1_46_19_curated
S_p1_S3_coassembly_k141_1481922_2

Not on your lists

comp(869..2032)
DNA (1164bp) protein (388aa)
Putative membrane protein {ECO:0000313|EMBL:KKS33625.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_12.;"
Galactosyl transferase bin=GWA2_CPR4_42_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
glycosyltransferase
S_p1_S3_coassembly_k141_1481922_3

Not on your lists

comp(2180..2680)
DNA (501bp) protein (167aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS38327.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_42_14.;"
Putative uncharacterized protein bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
S_p1_S3_coassembly_k141_1481922_4
R_OD1_52_25, Parcubacteria, Bacteria

Not on your lists

comp(2737..3411)
DNA (675bp) protein (225aa)
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase Tax=Fusobacterium varium ATCC 27725 RepID=C6JIM0_FUSVA
Tax=RIFCSPLOWO2_01_FULL_OD1_52_25_curated
S_p1_S3_coassembly_k141_1481922_5
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(3421..3696)
DNA (276bp) protein (92aa)
id=2130166 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
S_p1_S3_coassembly_k141_1481922_6
R_OP11_Roizmanbacteria_37_12, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(3792..4145)
DNA (354bp) protein (118aa)
Putative uncharacterized protein bin=GWF2_Planctomycetes_42_9 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_37_12_curated
S_p1_S3_coassembly_k141_1481922_7

Not on your lists

comp(4256..5308)
DNA (1053bp) protein (351aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2DGQ0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKW17035.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_50_14.;"
hypothetical protein
S_p1_S3_coassembly_k141_1481922_8
R_RIF_OD1_11_45_35, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(5968..6531)
DNA (564bp) protein (188aa)
seg 74..81 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_45_35_curated
S_p1_S3_coassembly_k141_1481922_9
R_RIF_OD1_12_48_12, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

6909..8735
DNA (1827bp) protein (609aa)
Small GTP-binding protein Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT16_9BACT
GTP-binding protein TypA
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_48_12_curated
S_p1_S3_coassembly_k141_1481922_10
R_RIF_OD1_12_48_27, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(8998..9342)
DNA (345bp) protein (115aa)
Glycine-rich RNA-binding protein GRP1A bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rnp-1 like RNA-binding protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_12_48_27_curated
S_p1_S3_coassembly_k141_1481922_11
RLO_PLX_64_10, Bacteria

Not on your lists

9665..10414
DNA (750bp) protein (250aa)
Putative uncharacterized protein Tax=uncultured bacterium HF0130_06E03 RepID=E0XSY0_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
S_p1_S3_coassembly_k141_1481922_12
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(10622..11410)
DNA (789bp) protein (263aa)
Putative ABC-2 type transport system, ATP-binding and permease component bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
putative ABC transporter ATP-binding and permease
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
S_p1_S3_coassembly_k141_1481922_13
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(11548..12282)
DNA (735bp) protein (245aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, ATP-binding component bin=GWB2_Proteobacteria_55_19 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
S_p1_S3_coassembly_k141_1481922_14
GWB1_OD1_49_9, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12279..12608)
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Acinetobacter pittii ANC 4052 RepID=R8YX71_ACIPI
Uncharacterized protein {ECO:0000313|EMBL:KKW11785.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_49_9.;"
hypothetical protein
S_p1_S3_coassembly_k141_1481922_15
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(12598..15294)
DNA (2697bp) protein (899aa)
Protein translocase subunit SecA bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Preprotein translocase subunit SecA
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
S_p1_S3_coassembly_k141_1481922_16
unknown

Not on your lists

comp(15263..15400)
DNA (138bp) protein (46aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1481922_17
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15397..15900)
DNA (504bp) protein (168aa)
protein of unknown function DUF88 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
S_p1_S3_coassembly_k141_1481922_18
R_RIF_OD1_10_39_26, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(15996..16280)
DNA (285bp) protein (95aa)
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_10_39_26_curated
Displaying 18 items

View Taxonomy