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S_p1_S3_coassembly_k141_579477

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_579477_1
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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1..966
DNA (966bp) protein (322aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
Methionine--tRNA ligase Tax=Oscillochloris trichoides DG-6 RepID=E1IEC6_9CHLR
methionyl-tRNA synthetase
S_p1_S3_coassembly_k141_579477_trna_3
unknown

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comp(1132..1204)
DNA (73bp)
transferRNA Lys
S_p1_S3_coassembly_k141_579477_trna_2
unknown

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comp(1393..1466)
DNA (74bp)
transferRNA Glu
S_p1_S3_coassembly_k141_579477_2
unknown

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1918..2376
DNA (459bp) protein (153aa)

This feature has no annotations

S_p1_S3_coassembly_k141_579477_3
unknown

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2457..2957
DNA (501bp) protein (167aa)

This feature has no annotations

S_p1_S3_coassembly_k141_579477_4
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2954..3115
DNA (162bp) protein (54aa)
Uncharacterized protein Tax=Roseovarius sp. 217 RepID=A3W3W6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KCZ56870.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
hypothetical protein
S_p1_S3_coassembly_k141_579477_5
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

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comp(3439..4236)
DNA (798bp) protein (266aa)
PREDICTED: nitrilase and fragile histidine triad fusion protein NitFhit-like Tax=Megachile rotundata RepID=UPI000258EA48
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_579477_6
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

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comp(4264..5523)
DNA (1260bp) protein (420aa)
GTP-binding proten HflX Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628E6F
GTP-binding proten HflX
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_579477_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5612..6514)
DNA (903bp) protein (301aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036C4560
NAD-dependent dehydratase {ECO:0000313|EMBL:KIO49292.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
epimerase
S_p1_S3_coassembly_k141_579477_8
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6517..7476)
DNA (960bp) protein (320aa)
Glycosyl transferase family 2 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K4G4_NITWC
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADJ27861.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
S_p1_S3_coassembly_k141_579477_9
unknown

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7551..8162
DNA (612bp) protein (204aa)

This feature has no annotations

S_p1_S3_coassembly_k141_579477_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(7975..8382)
DNA (408bp) protein (136aa)
Lactoylglutathione lyase-like lyase Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG31_SINAD
lactoylglutathione lyase-like lyase
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:AGA27626.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
S_p1_S3_coassembly_k141_579477_11
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8417..9100)
DNA (684bp) protein (228aa)
Uncharacterized protein Tax=Proteobacteria RepID=Q8XW61_RALSO
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:EXS68253.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
S_p1_S3_coassembly_k141_579477_12
Bdellovibrio sp. ArHS, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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9287..11032
DNA (1746bp) protein (582aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio sp. ArHS.;"
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI00031750ED
hypothetical protein
S_p1_S3_coassembly_k141_579477_13
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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11342..13399
DNA (2058bp) protein (686aa)
Extracellular solute-binding protein family 5 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RIE6_DESPD
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGO34350.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
family 5 extracellular solute-binding protein
S_p1_S3_coassembly_k141_579477_14
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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13403..14461
DNA (1059bp) protein (353aa)
ABC transporter permease Tax=Burkholderia glumae (strain BGR1) RepID=C5AER3_BURGB
ABC transporter, permease protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
S_p1_S3_coassembly_k141_579477_15
Magnetococcus marinus, Magnetococcus, Magnetococcales, Alphaproteobacteria, Proteobacteria, Bacteria

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14466..15584
DNA (1119bp) protein (373aa)
Binding-protein-dependent transport systems inner membrane component Tax=Magnetococcus sp. (strain MC-1) RepID=A0L7N1_MAGSM
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABK43974.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae; Magnetococcus.;" source="Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1).;"
S_p1_S3_coassembly_k141_579477_16
unknown

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comp(15716..15991)
DNA (276bp) protein (92aa)

This feature has no annotations

S_p1_S3_coassembly_k141_579477_17
unknown

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16300..16689
DNA (390bp) protein (130aa)

This feature has no annotations

S_p1_S3_coassembly_k141_579477_18
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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16761..19199
DNA (2439bp) protein (813aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
Phosphoenolpyruvate synthase Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LTQ4_DESBD
phosphoenolpyruvate synthase
S_p1_S3_coassembly_k141_579477_19
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19231..20181)
DNA (951bp) protein (317aa)
Porphobilinogen deaminase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000255|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000255|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=HMBS {ECO:0000255|HAMAP-Rule:MF_00260};; Pre-uroporphyrinogen synthase {ECO:0000255|HAMAP-Rule:MF_00260}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain Y51).;"
Porphobilinogen deaminase Tax=Desulfitobacterium hafniense RepID=HEM3_DESHD
hemC; porphobilinogen deaminase
S_p1_S3_coassembly_k141_579477_20
unknown

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20415..21305
DNA (891bp) protein (297aa)

This feature has no annotations

S_p1_S3_coassembly_k141_579477_21
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

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21302..22300
DNA (999bp) protein (333aa)
PpiC-type peptidyl-prolyl cis-trans isomerase Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000288C0D5
PPIC-type PPIASE domain-containing protein
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_579477_22
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

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22307..24601
DNA (2295bp) protein (765aa)
ABC transporter periplasmic component Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000288DA60
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EFK10525.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
livJ; branched chain amino-acid ABC transporter substrate-binding protein
S_p1_S3_coassembly_k141_579477_23
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(24674..25522)
DNA (849bp) protein (283aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TS90_9PROT
Alpha/beta hydrolase {ECO:0000313|EMBL:ETX05877.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
alpha/beta hydrolase family protein
S_p1_S3_coassembly_k141_579477_trna_1
unknown

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comp(25693..25764)
DNA (72bp)
transferRNA Gln
S_p1_S3_coassembly_k141_579477_24
CSP1_5_NC10, NC10, Bacteria

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25830..27320
DNA (1491bp) protein (497aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (EC:6.3.2.13) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
UDP-N-acetylmuramyl tripeptide synthetase
Tax=CSP1_5_NC10
S_p1_S3_coassembly_k141_579477_25
unknown

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27420..27488
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 28 items

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