ggKbase home page

S_p1_S3_coassembly_k141_877519

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_877519_1
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..784)
DNA (783bp) protein (261aa)
Acyl-CoA dehydrogenase, middle domain protein Tax=Alcanivorax sp. DG881 RepID=B4WZD0_9GAMM
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
S_p1_S3_coassembly_k141_877519_2
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(979..1968)
DNA (990bp) protein (330aa)
Integral membrane protein TerC Tax=Oscillochloris trichoides DG-6 RepID=E1IHS0_9CHLR
hypothetical protein
Tax=CG_Delta_07
S_p1_S3_coassembly_k141_877519_3
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(2095..4086)
DNA (1992bp) protein (664aa)
Metal dependent phosphohydrolase Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QTD0_CHLT3
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ACF14229.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton.;" source="Chloroherpeton thalassium (strain ATCC 35110 / GB-78).;"
S_p1_S3_coassembly_k141_877519_4
unknown

Not on your lists

comp(4113..4994)
DNA (882bp) protein (294aa)

This feature has no annotations

S_p1_S3_coassembly_k141_877519_5
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

5027..7459
DNA (2433bp) protein (811aa)
ATP-dependent protease La (EC:3.4.21.53)
peptidase Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625FE4
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_877519_6
RBG_16_Planctomycetes_41_13_curated, Planctomycetes, Bacteria

Not on your lists

7636..8016
DNA (381bp) protein (127aa)
Phage-related protein Tax=Xylella fastidiosa RepID=Q9PAJ0_XYLFA
hypothetical protein
Tax=RBG_16_Planctomycetes_41_13_curated
S_p1_S3_coassembly_k141_877519_7
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8151..11246)
DNA (3096bp) protein (1032aa)
regulator of chromosome condensation, RCC1, partial Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000289E76E
triple helix repeat-containing collagen
Tax=RifOxyA12_full_Deltaproteobacteria_61_11_curated
S_p1_S3_coassembly_k141_877519_8
unknown

Not on your lists

11614..12039
DNA (426bp) protein (142aa)

This feature has no annotations

S_p1_S3_coassembly_k141_877519_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12089..12610)
DNA (522bp) protein (174aa)
HNH endonuclease {ECO:0000313|EMBL:ETX04403.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Putative HNH endonuclease bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
HNH endonuclease
S_p1_S3_coassembly_k141_877519_10
unknown

Not on your lists

comp(12647..12853)
DNA (207bp) protein (69aa)

This feature has no annotations

S_p1_S3_coassembly_k141_877519_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12904..14616)
DNA (1713bp) protein (571aa)
AMP-dependent synthetase and ligase Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH76_9FIRM
Acyl-CoA synthetase {ECO:0000313|EMBL:ETX03257.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
AMP-dependent synthetase and ligase
S_p1_S3_coassembly_k141_877519_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

14675..15781
DNA (1107bp) protein (369aa)
tRNA pseudouridine synthase D Tax=Deinococcus apachensis RepID=UPI000382F2B9
pseudouridylate synthase
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
S_p1_S3_coassembly_k141_877519_13
RLO_PLX_64_10, Bacteria

Not on your lists

comp(15983..16207)
DNA (225bp) protein (75aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
S_p1_S3_coassembly_k141_877519_14
unknown

Not on your lists

comp(16419..17108)
DNA (690bp) protein (230aa)
hypothetical protein
S_p1_S3_coassembly_k141_877519_15
unknown

Not on your lists

comp(17258..17623)
DNA (366bp) protein (122aa)

This feature has no annotations

S_p1_S3_coassembly_k141_877519_16
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17691..17942)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=Sphingobium sp. AP49 RepID=J2DVA0_9SPHN
Tax=RBG_13_Deltaproteobacteria_65_10_curated
S_p1_S3_coassembly_k141_877519_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(18072..18941)
DNA (870bp) protein (290aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
succinyl-CoA synthetase subsunit alpha Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002627EDA
succinyl-CoA synthetase subunit alpha
S_p1_S3_coassembly_k141_877519_18
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

comp(19350..20534)
DNA (1185bp) protein (395aa)
malate--CoA ligase subunit beta Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002627ED9
sucC; succinyl-CoA synthetase subunit beta
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_877519_19
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21005..22411)
DNA (1407bp) protein (469aa)
Uncharacterized protein Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2LA06_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC01541.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
hypothetical protein
S_p1_S3_coassembly_k141_877519_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(22598..24178)
DNA (1581bp) protein (527aa)
ABC transporter peptide-binding protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter peptide-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
S_p1_S3_coassembly_k141_877519_21
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24500..25741
DNA (1242bp) protein (414aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX01408.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Putative permease of the major facilitator superfamily bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
major facilitator superfamily permease
S_p1_S3_coassembly_k141_877519_22
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25959..26735
DNA (777bp) protein (259aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RPU1_9PROT
Short-chain dehydrogenase {ECO:0000313|EMBL:KFG70095.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
short-chain dehydrogenase/reductase SDR
S_p1_S3_coassembly_k141_877519_23
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

26966..27862
DNA (897bp) protein (299aa)
Magnesium/cobalt efflux protein Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PD77_DEFDS
magnesium/cobalt efflux protein
Magnesium/cobalt efflux protein {ECO:0000313|EMBL:BAI80550.1}; species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC; 101012 / SSM1).;"
Displaying 23 items

View Taxonomy