ggKbase home page

S_p2_S4_coassembly_k141_2104374

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_2104374_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(3..539)
DNA (537bp) protein (179aa)
hypothetical protein bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
S_p2_S4_coassembly_k141_2104374_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(583..1425)
DNA (843bp) protein (281aa)
dienelactone hydrolase-like enzyme bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
dienelactone hydrolase-like enzyme
Tax=CSP1_5_NC10
S_p2_S4_coassembly_k141_2104374_3
GWA2_Deltaproteobacteria_45_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1502..2137)
DNA (636bp) protein (212aa)
Superoxide dismutase (Fe) Tax=mine drainage metagenome RepID=E6PDX0_9ZZZZ
manganese and iron superoxide dismutase
Tax=GWA2_Deltaproteobacteria_45_12_curated
S_p2_S4_coassembly_k141_2104374_4
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

Not on your lists

comp(2263..2748)
DNA (486bp) protein (162aa)
Ferritin Dps family protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrosoarchaeum koreensis genus=Candidatus Nitrosoarchaeum taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
S_p2_S4_coassembly_k141_2104374_5
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(2874..3572)
DNA (699bp) protein (233aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034BBF7C
Pirin domain-containing protein
Pirin domain protein {ECO:0000313|EMBL:AFY88463.1}; species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
S_p2_S4_coassembly_k141_2104374_6
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

3751..8121
DNA (4371bp) protein (1457aa)
putative ATP-dependent DNA helicase Lhr (EC:3.6.1.-); K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] bin=RBG_19FT_COMBO_GAL15_69_19 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
DEAD/DEAH box helicase
Tax=RBG_16_Armatimonadetes_67_12_curated
S_p2_S4_coassembly_k141_2104374_7
unknown

Not on your lists

8181..8489
DNA (309bp) protein (103aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2104374_8
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9134..9370)
DNA (237bp) protein (79aa)
Integron integrase Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GE58_ALIDK
Integron integrase IntIPac {ECO:0000313|EMBL:CDS50120.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
integron integrase
S_p2_S4_coassembly_k141_2104374_9
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(9432..9698)
DNA (267bp) protein (89aa)
Plasmid stabilization system Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHP5_RHOMR
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:AEN73361.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
S_p2_S4_coassembly_k141_2104374_10
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(9695..9904)
DNA (210bp) protein (70aa)
Uncharacterized protein Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SRQ5_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
S_p2_S4_coassembly_k141_2104374_11
unknown

Not on your lists

9974..10231
DNA (258bp) protein (86aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2104374_12
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10117..10941)
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHK2_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM95041.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
S_p2_S4_coassembly_k141_2104374_13
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11249..13591)
DNA (2343bp) protein (781aa)
Serine proteases, subtilase family Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82VB3_NITEU
serine protease
Serine proteases, subtilase family {ECO:0000313|EMBL:CAD85094.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
S_p2_S4_coassembly_k141_2104374_14
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13893..14408
DNA (516bp) protein (172aa)
dTDP-4-dehydrorhamnose 3,5-epimerase Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXV2_DYAFD
dTDP-4-dehydrorhamnose 3,5-epimerase
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ACT95135.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
S_p2_S4_coassembly_k141_2104374_15
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14405..15283
DNA (879bp) protein (293aa)
hypothetical protein Tax=Leeia oryzae RepID=UPI000382EA74
HpcH/HpaI aldolase
Tax=RBG_16_Gamma2_64_11_curated
S_p2_S4_coassembly_k141_2104374_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(15201..16085)
DNA (885bp) protein (295aa)
Uncharacterized protein Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GCY8_DESGI
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
S_p2_S4_coassembly_k141_2104374_17
unknown

Not on your lists

16105..16410
DNA (306bp) protein (102aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2104374_18
GWA2_Deltaproteobacteria_45_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16829..17407)
DNA (579bp) protein (193aa)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI00034C3FC6
Protein of unknown function (DUF3257)
Tax=GWA2_Deltaproteobacteria_45_12_curated
S_p2_S4_coassembly_k141_2104374_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(17423..18514)
DNA (1092bp) protein (364aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Probable dual-specificity RNA methyltransferase RlmN Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH75_9BACT
pyruvate formate lyase activating enzyme 2 (yfgB)
S_p2_S4_coassembly_k141_2104374_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(18523..19278)
DNA (756bp) protein (252aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH76_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69108.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_2104374_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(19275..20294)
DNA (1020bp) protein (340aa)
Aminodeoxychorismate lyase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH77_9BACT
aminodeoxychorismate lyase
Aminodeoxychorismate lyase {ECO:0000313|EMBL:CBE69109.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_2104374_22
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20291..20731)
DNA (441bp) protein (147aa)
Holliday junction resolvase (EC:3.1.-.-)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative Holliday junction resolvase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH78_9BACT
S_p2_S4_coassembly_k141_2104374_23
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

20809..21492
DNA (684bp) protein (228aa)
Endonuclease III {ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|PIRNR:PIRNR001435};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Endonuclease III Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH79_9BACT
hypothetical protein
S_p2_S4_coassembly_k141_2104374_24
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(21440..21586)
DNA (147bp) protein (49aa)
threonine synthase (TS) (EC:4.2.3.1)
Putative threonine synthase (TS) (Modular protein) {ECO:0000313|EMBL:CBE69112.1}; EC=4.2.3.1 {ECO:0000313|EMBL:CBE69112.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative threonine synthase (TS) (Modular protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH80_9BACT
Displaying 24 items

View Taxonomy