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S_p2_S4_coassembly_k141_2126385

Search features with annotation key words

Displaying items 1-30 of 242 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_2126385_1
unknown

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3..545
DNA (543bp) protein (181aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2126385_2
AR5, Aenigmarchaeota, DPANN, Archaea

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870..2228
DNA (1359bp) protein (453aa)
Putative uncharacterized protein bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
RNA-directed DNA polymerase Reverse transcriptase
Tax=AR5
S_p2_S4_coassembly_k141_2126385_3
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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2290..2544
DNA (255bp) protein (85aa)
Tax=RBG_16_Micrarchaeota_49_10_curated
S_p2_S4_coassembly_k141_2126385_4
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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2593..3525
DNA (933bp) protein (311aa)
30S ribosomal protein S5 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rps5p; 30S ribosomal protein S5P
Tax=CG_Aenigma_01
S_p2_S4_coassembly_k141_2126385_5
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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3522..3887
DNA (366bp) protein (122aa)
rpl30p; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
LSU ribosomal protein L30P
Tax=RBG_16_Micrarchaeota_36_9_curated
S_p2_S4_coassembly_k141_2126385_6
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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3892..4284
DNA (393bp) protein (131aa)
50S ribosomal protein L15P Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD78_METIK
50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5).;"
S_p2_S4_coassembly_k141_2126385_7
AR5, Aenigmarchaeota, DPANN, Archaea

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4358..5914
DNA (1557bp) protein (519aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
preprotein translocase, SecY subunit
Tax=AR5
S_p2_S4_coassembly_k141_2126385_8
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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5954..6538
DNA (585bp) protein (195aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00234}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00234};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00234};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00234}; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125).;"
Adenylate kinase Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=A8ABS2_IGNH4
adenylate kinase
S_p2_S4_coassembly_k141_2126385_9
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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6546..6995
DNA (450bp) protein (150aa)
hypothetical protein
Putative membrane protein bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Tax=RBG_16_Micrarchaeota_36_9_curated
S_p2_S4_coassembly_k141_2126385_10
Methanothermobacter sp. CaT2, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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7049..8002
DNA (954bp) protein (318aa)
truB; pseudouridine synthase B (EC:4.2.1.70)
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01081}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobacter sp. CaT2.;"
Probable tRNA pseudouridine synthase B Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PV69_METTM
S_p2_S4_coassembly_k141_2126385_11
unknown

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8458..8574
DNA (117bp) protein (39aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2126385_12
GWA1_OD1_36_12, Parcubacteria, Bacteria

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8610..8903
DNA (294bp) protein (98aa)
Putative uncharacterized protein Tax=Thermococcus sp. AM4 RepID=B7R2W0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KKP92460.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_36_12.;"
hypothetical protein
S_p2_S4_coassembly_k141_2126385_13
Thermoplasmatales archaeon I-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(8905..9048)
DNA (144bp) protein (48aa)
Uncharacterized protein Tax=Thermoplasmatales archaeon I-plasma RepID=T0MY01_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EQB66295.1}; species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; environmental samples.;" source="Thermoplasmatales archaeon I-plasma.;"
YHS domain-containing protein
S_p2_S4_coassembly_k141_2126385_14
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(9058..9327)
DNA (270bp) protein (90aa)
transmembrane_regions bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Tax=AR5
S_p2_S4_coassembly_k141_2126385_15
unknown

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comp(9375..9755)
DNA (381bp) protein (127aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2126385_16

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9771..10193
DNA (423bp) protein (141aa)
PadR-like protein family transcriptional regulator
PadR-like family transcriptional regulator bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
PadR-like protein family transcriptional regulator {ECO:0000313|EMBL:AJF59638.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_2126385_17
AR6, Pacearchaeaota, DPANN, Archaea

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10172..10678
DNA (507bp) protein (169aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036DF465
GntR family transcriptional regulator
Tax=AR6
S_p2_S4_coassembly_k141_2126385_18
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

10728..11306
DNA (579bp) protein (193aa)
hypothetical protein
transmembrane_regions bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_2126385_19
unknown

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11260..11502
DNA (243bp) protein (81aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2126385_20
RIFOXYB1_FULL_OD1_Azambacteria_40_33_curated, Azambacteria, Parcubacteria, Bacteria

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11496..12113
DNA (618bp) protein (206aa)
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=RIFOXYB1_FULL_OD1_Azambacteria_40_33_curated
S_p2_S4_coassembly_k141_2126385_21

Not on your lists

12128..12985
DNA (858bp) protein (286aa)
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:KKS91667.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_43_11.;"
Cytochrome c biogenesis protein transmembrane region bin=GWA1_ZB2_49_26 species=ACD24 genus=ACD24 taxon_order=ACD24 taxon_class=ACD24 phylum=WWE3 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Cytochrome c biogenesis protein transmembrane region
S_p2_S4_coassembly_k141_2126385_22

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12982..13224
DNA (243bp) protein (81aa)
hypothetical protein
id=5103497 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62778.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p2_S4_coassembly_k141_2126385_23

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13221..13748
DNA (528bp) protein (176aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN93525.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Uncharacterized protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
S_p2_S4_coassembly_k141_2126385_24
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13735..14013)
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVT7_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM39765.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S_p2_S4_coassembly_k141_2126385_25
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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14077..16143
DNA (2067bp) protein (689aa)
copA; copper-exporting P-type ATPase A (EC:3.6.3.-)
Copper-exporting P-type ATPase A Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ63_NITGG
Tax=RBG_13_Bathyarchaeota_38_9_curated
S_p2_S4_coassembly_k141_2126385_26
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(16148..16609)
DNA (462bp) protein (154aa)
putative Micrococcal nuclease (EC:3.1.31.1)
Putative Micrococcal nuclease {ECO:0000313|EMBL:AIC15461.1}; EC=3.1.31.1 {ECO:0000313|EMBL:AIC15461.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Nuclease-like protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EJY8_9ARCH
S_p2_S4_coassembly_k141_2126385_27
GWA2_OP3_52_12_curated, Omnitrophica, Bacteria

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16663..17355
DNA (693bp) protein (231aa)
Oxidoreductase FAD/NAD(P)-binding protein bin=GWA2_OP3_52_12 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
oxidoreductase FAD-binding subunit
Tax=GWA2_OP3_52_12_curated
S_p2_S4_coassembly_k141_2126385_28
CG_Pacearch_06, Pacearchaeota, Archaea

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comp(17482..17712)
DNA (231bp) protein (77aa)
glutaredoxin-like protein
glutaredoxin-like protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=CG_Pacearch_06
S_p2_S4_coassembly_k141_2126385_29

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comp(17752..18504)
DNA (753bp) protein (251aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Iron complex transport system substrate-binding protein {ECO:0000313|EMBL:KHO45402.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
btuF; periplasmatic binding protein
S_p2_S4_coassembly_k141_2126385_30
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18501..18989)
DNA (489bp) protein (163aa)
peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QD21_9FIRM
Peroxiredoxin {ECO:0000313|EMBL:EKP94491.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
Displaying items 1-30 of 242 in total

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