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S_p2_S4_coassembly_k141_2290348

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_2290348_1
unknown

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comp(67..198)
DNA (132bp) protein (44aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2290348_2

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comp(441..905)
DNA (465bp) protein (155aa)
Marine sediment metagenome DNA, contig: S01H1_S17755 {ECO:0000313|EMBL:GAG15767.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
S_p2_S4_coassembly_k141_2290348_3

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1604..2545
DNA (942bp) protein (314aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L3
S_p2_S4_coassembly_k141_2290348_4

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2548..3354
DNA (807bp) protein (269aa)
50S ribosomal protein L4P, large subunit ribosomal protein L4e {ECO:0000313|EMBL:AJS12210.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl4lp; 50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L4
S_p2_S4_coassembly_k141_2290348_5
CG_Woesearch_02, Woesearchaeota, Archaea

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3356..3616
DNA (261bp) protein (87aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
50S ribosomal protein L23P
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_2290348_6

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3625..4344
DNA (720bp) protein (240aa)
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L2
S_p2_S4_coassembly_k141_2290348_7

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4346..4729
DNA (384bp) protein (128aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rps19p; 30S ribosomal protein S19
S_p2_S4_coassembly_k141_2290348_8

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4732..5205
DNA (474bp) protein (158aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22P
S_p2_S4_coassembly_k141_2290348_9

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5186..5935
DNA (750bp) protein (250aa)
30S ribosomal protein S3 Tax=uncultured organism RepID=U3GQK3_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
S_p2_S4_coassembly_k141_2290348_10

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5904..6128
DNA (225bp) protein (75aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L29
S_p2_S4_coassembly_k141_2290348_11

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6143..6451
DNA (309bp) protein (103aa)
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604, ECO:0000256|PIRNR:PIRNR037511}; species="Archaea.;" source="archaeon GW2011_AR11.;"
translation initiation factor 1 (eIF-1/SUI1); K03113 translation initiation factor 1 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
translation initiation factor 1 (eIF-1/SUI1)
S_p2_S4_coassembly_k141_2290348_12

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6480..6902
DNA (423bp) protein (141aa)
30S ribosomal protein S17P Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12162.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17
S_p2_S4_coassembly_k141_2290348_13

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6904..7305
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
S_p2_S4_coassembly_k141_2290348_14

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7307..7684
DNA (378bp) protein (126aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24
S_p2_S4_coassembly_k141_2290348_15

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7686..8375
DNA (690bp) protein (230aa)
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; species="Archaea.;" source="archaeon GW2011_AR11.;"
30S ribosomal protein S4E; K02987 small subunit ribosomal protein S4e bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S4
S_p2_S4_coassembly_k141_2290348_16

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8377..8892
DNA (516bp) protein (172aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
S_p2_S4_coassembly_k141_2290348_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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8889..9119
DNA (231bp) protein (77aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003729D23
SSU ribosomal protein S14P
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p2_S4_coassembly_k141_2290348_18

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9129..9518
DNA (390bp) protein (130aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rps8p; 30S ribosomal protein S8P
S_p2_S4_coassembly_k141_2290348_19

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9569..10084
DNA (516bp) protein (172aa)
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12027.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L6
S_p2_S4_coassembly_k141_2290348_20

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10081..10680
DNA (600bp) protein (200aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037197A6
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO51172.1}; species="Archaea.;" source="archaeon GW2011_AR16.;"
rpl32e; 50S ribosomal protein L32e
S_p2_S4_coassembly_k141_2290348_21

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10682..11128
DNA (447bp) protein (149aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000381F97D
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; species="Archaea.;" source="archaeon GW2011_AR11.;"
rpl19e; 50S ribosomal protein L19e
S_p2_S4_coassembly_k141_2290348_22

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11125..11703
DNA (579bp) protein (193aa)
50S ribosomal protein L18P Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL18_NANEQ
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18P
S_p2_S4_coassembly_k141_2290348_23
CG_Woesearch_02, Woesearchaeota, Archaea

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11675..12577
DNA (903bp) protein (301aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_2290348_24
CG_Woesearch_02, Woesearchaeota, Archaea

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12579..13019
DNA (441bp) protein (147aa)
50S ribosomal protein L30P bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L30P
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_2290348_25

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13019..13498
DNA (480bp) protein (160aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
S_p2_S4_coassembly_k141_2290348_26

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13563..14966
DNA (1404bp) protein (468aa)
Protein translocase subunit SecY {ECO:0000256|RuleBase:RU000537}; species="Archaea.;" source="archaeon GW2011_AR11.;"
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
S_p2_S4_coassembly_k141_2290348_27

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14967..15743
DNA (777bp) protein (259aa)
Putative uncharacterized protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46823.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S_p2_S4_coassembly_k141_2290348_28
AR11, Woesearchaeaota, DPANN, Archaea

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comp(15737..16228)
DNA (492bp) protein (164aa)
seg bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=AR11
S_p2_S4_coassembly_k141_2290348_29
unknown

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comp(16255..16659)
DNA (405bp) protein (135aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2290348_30
CG_Woesearch_02, Woesearchaeota, Archaea

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16734..17234
DNA (501bp) protein (167aa)
50S ribosomal protein L14e bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
LSU ribosomal protein L14E
Tax=CG_Woesearch_02
Displaying items 1-30 of 46 in total

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