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ACD1_13

Alias: ACD1_17.26426.88

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD1_13_1
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(308..841)
DNA (534bp) protein (178aa)
seg (db=Seg db_id=seg from=28 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
Uncharacterized protein {ECO:0000313|EMBL:KKQ45479.1}; TaxID=1618698 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_37_82.;"
ACD1_13_2
GWC1_OD1_36_108, Parcubacteria, Bacteria

Not on your lists

comp(889..2340)
DNA (1452bp) protein (484aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase, A subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FP46_DESHD (db=UNIREF evalue=7.0e-147 bit_score=524.0 identity=56.94 coverage=96.4876033057851)
seg (db=Seg db_id=seg from=146 to=158)
ACD1_13_3
GWC1_OD1_36_108, Parcubacteria, Bacteria

Not on your lists

comp(2517..2804)
DNA (288bp) protein (96aa)
aspartyl/glutamyl-tRNA amidotransferase subunit C
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=1 to=94 evalue=5.7e-24)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=2 to=95 evalue=6.8e-20 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Glu-tRNAGln (db=HMMPfam db_id=PF02686 from=18 to=91 evalue=3.2e-19 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
ACD1_13_4
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(2883..5105)
DNA (2223bp) protein (741aa)
NAD-dependent DNA ligase (EC:6.5.1.2)
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase, NAD-dependent n=1 Tax=Thermincola sp. JR RepID=D5XD69_9FIRM (db=UNIREF evalue=4.0e-148 bit_score=529.0 identity=43.53 coverage=89.608636977058)
coiled-coil (db=Coil db_id=coil from=3 to=24 evalue=NA)
ACD1_13_5
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5230..5775)
DNA (546bp) protein (182aa)
seg (db=Seg db_id=seg from=133 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
seg (db=Seg db_id=seg from=159 to=172)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=17 to=37 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
ACD1_13_6
GWC1_OD1_36_108, Parcubacteria, Bacteria

Not on your lists

comp(5782..6405)
DNA (624bp) protein (208aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=37 to=60 evalue=0.00038 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Uncharacterized protein Tax=GWC1_OD1_36_108
ACD1_13_7

Not on your lists

comp(6416..6889)
DNA (474bp) protein (158aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=40 to=51)
coiled-coil (db=Coil db_id=coil from=38 to=59 evalue=NA)
Pili subunits (db=superfamily db_id=SSF54523 from=9 to=157 evalue=1.3e-09)
ACD1_13_8

Not on your lists

comp(6941..7735)
DNA (795bp) protein (265aa)
peptidase A24A domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=240 to=262)
transmembrane_regions (db=TMHMM db_id=tmhmm from=191 to=225)
transmembrane_regions (db=TMHMM db_id=tmhmm from=157 to=179)
ACD1_13_9
CG_Moran_01, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7810..8184)
DNA (375bp) protein (125aa)
seg (db=Seg db_id=seg from=12 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=8 to=28 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=123 evalue=2.1e-16)
ACD1_13_10

Not on your lists

comp(8292..8672)
DNA (381bp) protein (127aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=3 to=23 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
ACD1_13_11
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8824..9273)
DNA (450bp) protein (150aa)
seg (db=Seg db_id=seg from=32 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=8 to=28 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=116 evalue=3.6e-14)
ACD1_13_12
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(9383..10591)
DNA (1209bp) protein (403aa)
pilus assembly protein PilC
pilin biogenesis protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B268E (db=UNIREF evalue=5.0e-67 bit_score=258.0 identity=36.34 coverage=97.7667493796526)
transmembrane_regions (db=TMHMM db_id=tmhmm from=374 to=396)
transmembrane_regions (db=TMHMM db_id=tmhmm from=221 to=240)
ACD1_13_13
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10687..11766)
DNA (1080bp) protein (360aa)
Twitching motility protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R937_AMMDK (db=UNIREF evalue=7.0e-98 bit_score=360.0 identity=49.44 coverage=96.6666666666667)
twitching motility protein PilT
twitching motility protein PilT
pilT_fam: twitching motility protein (db=HMMTigr db_id=TIGR01420 from=9 to=351 evalue=2.6e-163 interpro_id=IPR006321 interpro_description=Pilus retraction protein PilT GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
ACD1_13_14

Not on your lists

comp(11908..12285)
DNA (378bp) protein (126aa)
Two component transcriptional regulator, winged helix
Response regulator domain, but no DNA binding domain-containing protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TKW5_9MICO (db=UNIREF evalue=2.0e-12 bit_score=74.7 identity=33.33 coverage=91.2698412698413)
seg (db=Seg db_id=seg from=48 to=62)
CheY-like (db=superfamily db_id=SSF52172 from=2 to=124 evalue=2.0e-33 interpro_id=IPR011006 interpro_description=CheY-like)
ACD1_13_15
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12368..14086)
DNA (1719bp) protein (573aa)
type IV pilus assembly protein PilB
type IV pilus assembly protein PilB
Type IV pilus assembly protein PilB n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3PDA5_DEFDS (db=UNIREF evalue=3.0e-127 bit_score=459.0 identity=45.71 coverage=90.2268760907504)
coiled-coil (db=Coil db_id=coil from=2 to=23 evalue=NA)
ACD1_13_16
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14285..15112)
DNA (828bp) protein (276aa)
coiled-coil (db=Coil db_id=coil from=30 to=61 evalue=NA)
seg (db=Seg db_id=seg from=117 to=131)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Uncharacterized protein {ECO:0000313|EMBL:KKQ45464.1}; TaxID=1618698 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_37_82.;"
ACD1_13_17
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15186..15722)
DNA (537bp) protein (179aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
coiled-coil (db=Coil db_id=coil from=76 to=97 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:KKQ81073.1}; TaxID=1618706 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWD2_38_7.;"
ACD1_13_18
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(15786..16883)
DNA (1098bp) protein (366aa)
type IV pilus assembly protein PilM
pilM: type IV pilus assembly protein PilM (db=HMMTigr db_id=TIGR01175 from=8 to=359 evalue=1.2e-36 interpro_id=IPR005883 interpro_description=Type IV pilus assembly protein PilM)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=193 to=357 evalue=2.9e-18)
Competence_A (db=HMMPfam db_id=PF11104 from=59 to=193 evalue=1.8e-12)
ACD1_13_19
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

17311..18054
DNA (744bp) protein (248aa)
phosphoribosyltransferase
Competence protein F-like protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NTF2_9DELT (db=UNIREF evalue=2.0e-24 bit_score=115.0 identity=34.3 coverage=90.7258064516129)
seg (db=Seg db_id=seg from=121 to=134)
PRTase-like (db=superfamily db_id=SSF53271 from=52 to=243 evalue=7.9e-21)
ACD1_13_20
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

18219..18401
DNA (183bp) protein (61aa)
18219..18401 + (rbs_motif=None rbs_spacer=None)
ACD1_13_21
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

18561..18944
DNA (384bp) protein (128aa)
coiled-coil (db=Coil db_id=coil from=78 to=99 evalue=NA)
seg (db=Seg db_id=seg from=76 to=98)
Tax=GWC1_OD1_38_22
ACD1_13_22
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(18991..19587)
DNA (597bp) protein (199aa)
UPI00016E2050 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E2050 (db=UNIREF evalue=3.0e-16 bit_score=88.2 identity=37.07 coverage=96.9849246231156)
hypothetical protein; K05307 thiamine-triphosphatase [EC:3.6.1.28] (db=KEGG evalue=1.0e-14 bit_score=82.8 identity=37.79 coverage=82.9145728643216)
seg (db=Seg db_id=seg from=145 to=156)
CYTH (db=HMMPfam db_id=PF01928 from=1 to=187 evalue=4.8e-19 interpro_id=IPR008172 interpro_description=Adenylate cyclase GO=Molecular Function: adenylate cyclase activity (GO:0004016), Biological Process: cAMP biosynthetic process (GO:0006171))
ACD1_13_23
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

19784..20065
DNA (282bp) protein (94aa)
19784..20065 + (rbs_motif=TAAA rbs_spacer=14bp)
ACD1_13_24

Not on your lists

comp(20002..20325)
DNA (324bp) protein (108aa)
cupin domain-containing protein
RmlC-like cupins (db=superfamily db_id=SSF51182 from=7 to=107 evalue=9.2e-21 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
Cupin_2 (db=HMMPfam db_id=PF07883 from=40 to=105 evalue=1.2e-09 interpro_id=IPR013096 interpro_description=Cupin 2, conserved barrel)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=23 to=105 evalue=0.00044 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
ACD1_13_25

Not on your lists

comp(20389..21207)
DNA (819bp) protein (273aa)
glutamate racemase (EC:5.1.1.3)
ASP_GLU_RACEMASE_1 (db=PatternScan db_id=PS00923 from=66 to=74 evalue=0.0 interpro_id=IPR018187 interpro_description=Asp/Glu racemase, active site GO=Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives (GO:0016855))
GLUTAMATE RACEMASE (db=HMMPanther db_id=PTHR21198 from=1 to=261 evalue=3.7e-62)
glut_race: glutamate racemase (db=HMMTigr db_id=TIGR00067 from=1 to=255 evalue=3.0e-46 interpro_id=IPR004391 interpro_description=Glutamate racemase GO=Molecular Function: glutamate racemase activity (GO:0008881), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
ACD1_13_26

Not on your lists

21465..21848
DNA (384bp) protein (128aa)
21465..21848 + (rbs_motif=AACAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25763.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD1_13_27

Not on your lists

comp(21916..22419)
DNA (504bp) protein (168aa)
21916..22419 - (rbs_motif=AACAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE18899.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD1_13_28
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(22457..23125)
DNA (669bp) protein (223aa)
LexA family transcriptional repressor (EC:3.4.21.88)
seg (db=Seg db_id=seg from=2 to=14)
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=5 to=213 evalue=2.8e-27 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=82 to=210 evalue=2.3e-19 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
ACD1_13_29
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

23456..23956
DNA (501bp) protein (167aa)
seg (db=Seg db_id=seg from=32 to=41)
CheY-like (db=superfamily db_id=SSF52172 from=15 to=138 evalue=8.4e-15 interpro_id=IPR011006 interpro_description=CheY-like)
Response_reg (db=HMMPfam db_id=PF00072 from=20 to=125 evalue=1.2e-09 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=15 to=124 evalue=3.0e-08)
ACD1_13_30

Not on your lists

comp(24011..25318)
DNA (1308bp) protein (436aa)
hypothetical protein
tetracycline resistance protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745101 (db=UNIREF evalue=9.0e-48 bit_score=194.0 identity=39.18 coverage=60.7798165137615)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
transmembrane_regions (db=TMHMM db_id=tmhmm from=142 to=159)
Displaying items 1-30 of 32 in total

View Taxonomy