ggKbase home page

ACD1_16

Alias: ACD1_1913.5540.72

Search features with annotation key words

Displaying 4 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD1_16_1
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

367..1173
DNA (807bp) protein (269aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=5 to=17)
Uncharacterized protein {ECO:0000313|EMBL:KKQ60738.1}; TaxID=1618897 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_38_22.;"
ACD1_16_2
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

1294..2214
DNA (921bp) protein (307aa)
seg (db=Seg db_id=seg from=22 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=38)
ACD1_16_3
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

3351..4130
DNA (780bp) protein (260aa)
hypothetical protein
LigB subunit of an aromatic-ring-opening dioxygenase LigAB (db=superfamily db_id=SSF53213 from=2 to=258 evalue=2.8e-33 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
LigB (db=HMMPfam db_id=PF02900 from=7 to=253 evalue=5.7e-28 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
no description (db=Gene3D db_id=G3DSA:3.40.830.10 from=2 to=219 evalue=0.00032)
ACD1_16_4
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

4999..5427
DNA (429bp) protein (143aa)
ribonuclease HI
coiled-coil (db=Coil db_id=coil from=80 to=101 evalue=NA)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=138 evalue=1.5e-24 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
RnaseH (db=HMMPfam db_id=PF00075 from=2 to=137 evalue=3.2e-16 interpro_id=IPR002156 interpro_description=Ribonuclease H GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ribonuclease H activity (GO:0004523))
Displaying 4 items

View Taxonomy