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ACD1_31

Alias: ACD1_107.7187.85

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD1_31_1
GWC1_OD1_36_108, Parcubacteria, Bacteria

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comp(175..339)
DNA (165bp) protein (55aa)
seg (db=Seg db_id=seg from=28 to=39)
rpmG_bact: ribosomal protein L33 (db=HMMTigr db_id=TIGR01023 from=1 to=54 evalue=1.3e-18 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L33 (db=HMMPfam db_id=PF00471 from=9 to=54 evalue=3.2e-16 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=3 to=54 evalue=2.0e-14 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD1_31_2
GWC1_OD1_45_14, Parcubacteria, Bacteria

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comp(496..792)
DNA (297bp) protein (99aa)
hypothetical protein
GIY-YIG (db=HMMPfam db_id=PF01541 from=12 to=78 evalue=7.5e-14 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=10 to=94 evalue=2.4e-11 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR20208 from=7 to=43 evalue=0.00016)
ACD1_31_3
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(1244..1903)
DNA (660bp) protein (220aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
seg (db=Seg db_id=seg from=5 to=20)
coiled-coil (db=Coil db_id=coil from=87 to=108 evalue=NA)
TPR-like (db=superfamily db_id=SSF48452 from=162 to=211 evalue=1.8e-07)
ACD1_31_4
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(1920..2696)
DNA (777bp) protein (259aa)
PSP1 domain-containing protein
Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBC4_9CLOT (db=UNIREF evalue=6.0e-44 bit_score=181.0 identity=40.56 coverage=93.0501930501931)
seg (db=Seg db_id=seg from=38 to=47)
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B-RELATED (db=HMMPanther db_id=PTHR21600:SF3 from=71 to=225 evalue=2.1e-47)
ACD1_31_5

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comp(2772..3350)
DNA (579bp) protein (193aa)
tsf; elongation factor Ts
seg (db=Seg db_id=seg from=113 to=122)
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=54 to=192 evalue=6.4e-44 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=4 to=184 evalue=2.6e-41 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD1_31_6
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(3464..4225)
DNA (762bp) protein (254aa)
rpsB; ribosomal protein S2
seg (db=Seg db_id=seg from=162 to=177)
RIBOSOMAL_S2_1 (db=PatternScan db_id=PS00962 from=35 to=46 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsB_bact: ribosomal protein S2 (db=HMMTigr db_id=TIGR01011 from=32 to=253 evalue=1.5e-82 interpro_id=IPR005706 interpro_description=Ribosomal protein S2, bacteria/mitochondria/plastid GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD1_31_7
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

Not on your lists


4598..4873
DNA (276bp) protein (92aa)
50S ribosomal protein L31
seg (db=Seg db_id=seg from=61 to=89)
RIBOSOMAL_L31 (db=PatternScan db_id=PS01143 from=35 to=56 evalue=0.0 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L31: ribosomal protein L31 (db=HMMTigr db_id=TIGR00105 from=1 to=67 evalue=1.2e-27 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD1_31_8
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

5031..6104
DNA (1074bp) protein (358aa)
peptide chain release factor 1
peptide chain release factor 1
Peptide chain release factor 1 n=1 Tax=Bacillus tusciae DSM 2912 RepID=D5WX83_9BACL (db=UNIREF evalue=7.0e-99 bit_score=364.0 identity=53.91 coverage=95.2513966480447)
seg (db=Seg db_id=seg from=66 to=81)
ACD1_31_9
GWD2_OD1_36_198, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

6176..7069
DNA (894bp) protein (298aa)
hemK; Modification methylase, HemK family (EC:2.1.1.72)
coiled-coil (db=Coil db_id=coil from=156 to=177 evalue=NA)
RF_mod_PrmC: protein-(glutamine-N5) methy (db=HMMTigr db_id=TIGR03534 from=18 to=294 evalue=4.9e-83 interpro_id=IPR019874 interpro_description=Protein-(glutamine-N5) methyltransferase, release factor-specific)
hemK_fam: methyltransferase, HemK family (db=HMMTigr db_id=TIGR00536 from=1 to=294 evalue=3.3e-45 interpro_id=IPR004556 interpro_description=Modification methylase HemK GO=Biological Process: protein amino acid methylation (GO:0006479), Molecular Function: protein methyltransferase activity (GO:0008276))
Displaying 9 items

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