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ACD1_48

Alias: ACD5_138.6176.92

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD1_48_1
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(124..522)
DNA (399bp) protein (133aa)
50S ribosomal protein L7/L12
seg (db=Seg db_id=seg from=44 to=62)
coiled-coil (db=Coil db_id=coil from=105 to=129 evalue=NA)
L12: ribosomal protein L7/L12 (db=HMMTigr db_id=TIGR00855 from=12 to=132 evalue=1.0e-58 interpro_id=IPR000206 interpro_description=Ribosomal protein L7/L12 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD1_48_2
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(637..1182)
DNA (546bp) protein (182aa)
50S ribosomal protein L10
50S ribosomal protein L10 n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWH0_9CLOT (db=UNIREF evalue=1.0e-33 bit_score=145.0 identity=48.52 coverage=91.7582417582418)
RIBOSOMAL_L10 (db=PatternScan db_id=PS01109 from=15 to=49 evalue=0.0 interpro_id=IPR002363 interpro_description=Ribosomal protein L10, eubacterial, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L10 (db=HMMPfam db_id=PF00466 from=11 to=109 evalue=1.6e-20 interpro_id=IPR001790 interpro_description=Ribosomal protein L10 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
ACD1_48_3

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comp(1414..1731)
DNA (318bp) protein (106aa)
rpsP; 30S ribosomal protein S16
seg (db=Seg db_id=seg from=87 to=103)
S16: ribosomal protein S16 (db=HMMTigr db_id=TIGR00002 from=2 to=77 evalue=2.0e-21 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S16 (db=HMMPanther db_id=PTHR12919 from=1 to=77 evalue=2.9e-19 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD1_48_4

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comp(1900..2283)
DNA (384bp) protein (128aa)
NUDIX hydrolase
seg (db=Seg db_id=seg from=17 to=29)
seg (db=Seg db_id=seg from=47 to=55)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=35 to=56 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
ACD1_48_5

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comp(2565..2846)
DNA (282bp) protein (94aa)
histone family protein DNA-binding protein
HISTONE_LIKE (db=PatternScan db_id=PS00045 from=49 to=68 evalue=0.0 interpro_id=IPR020816 interpro_description=Histone-like DNA-binding protein, conserved site GO=Molecular Function: DNA binding (GO:0003677))
Bac_DNA_binding (db=HMMPfam db_id=PF00216 from=4 to=92 evalue=7.3e-27 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
IHF-like DNA-binding proteins (db=superfamily db_id=SSF47729 from=4 to=92 evalue=2.1e-24 interpro_id=IPR010992 interpro_description=IHF-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
ACD1_48_6

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comp(3184..3456)
DNA (273bp) protein (91aa)
3184..3456 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD58419.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD1_48_7
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(3553..5862)
DNA (2310bp) protein (770aa)
Chromosome segregation protein SMC n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRM0_9RICK (db=UNIREF evalue=3.0e-76 bit_score=290.0 identity=28.66 coverage=98.5714285714286)
chromosome partition protein smc
coiled-coil (db=Coil db_id=coil from=435 to=498 evalue=NA)
coiled-coil (db=Coil db_id=coil from=266 to=314 evalue=NA)
Displaying 7 items

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