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ACD1_50_7

Organism: ACD1

near complete RP 51 / 55 MC: 12 BSCG 49 / 51 MC: 2 ASCG 0 / 38
Location: comp(5202..5909)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 similarity KEGG
DB: KEGG
  • Identity: 36.1
  • Coverage: 183.0
  • Bit_score: 117
  • Evalue 6.20e-24
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=86 to=117 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 0.0
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=59 to=223 evalue=1.2e-42 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.20e-42

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Taxonomy

GWD2_OD1_38_11 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 708
ATGAAAATCAAGACGCAAAAAAAAGCAGCGAATATGCAGTTGAAAATTTCCAATGGCAATAAGACTAAGAATGAACTATTATTCAGTCCCTTGCTTGGCGGAAAGGTAGATGTTCAAGAATTTACCCAGCTTGATGACGGTCAACTAATTGCACTCGTGAGAAAAAACAGCAGTTTTGCTTGCGCAGAATTGCATCTTCGATATCAAAAAAAACTTTTTACTTACATATTTCATCTGGTTGGTAATCGCGACGAAACAGAGGATATCCTGCAAGCTGTATTTTTAAAGACTTTTAAGAACATCGAATATTTTGATACGACCAGAAAATTTTCTTCTTGGATATATCGAATAGCACATAATGAGTCGGTAAATTTTCTCAAGCGCAAAAGTAAGCGCTATACCGTTTCATGGGACGAGGTGGTGACGAGCAAGGATAAGTTGGAGACTGCCGCTAACGATGAGTCTTATGAGGATAAATGGATGCAGGAAGAAATTTCCAGGGAAATAAAGCAGGCGATGGAAAAACTCCCTGAAAAATACCAACGCGCGCTGCATTTGAGGTATTTTAAGGAGCATTCTTATGAGGATATTAGTAAAATTTTGGGAAAACCTGTTAACACGGTCGGGACATTGATTAATCGCGCTAAAAGAAAATTACTTGAAGTTGTGCAGCAGCAAGAGCAGCCAATTGATTTCAAGCTCCCATAA
PROTEIN sequence
Length: 236
MKIKTQKKAANMQLKISNGNKTKNELLFSPLLGGKVDVQEFTQLDDGQLIALVRKNSSFACAELHLRYQKKLFTYIFHLVGNRDETEDILQAVFLKTFKNIEYFDTTRKFSSWIYRIAHNESVNFLKRKSKRYTVSWDEVVTSKDKLETAANDESYEDKWMQEEISREIKQAMEKLPEKYQRALHLRYFKEHSYEDISKILGKPVNTVGTLINRAKRKLLEVVQQQEQPIDFKLP*