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ACD1_50

Alias: ACDUNK_1277.51397.83

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD1_50_1
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(178..396)
DNA (219bp) protein (73aa)
hypothetical protein (db=KEGG evalue=9.0e-10 bit_score=65.9 identity=44.05 coverage=79.4520547945205)
KGG (db=HMMPfam db_id=PF10685 from=29 to=44 evalue=0.00018 interpro_id=IPR019626 interpro_description=Stress-induced protein, KGG, repeat)
hypothetical protein alias=ACD1_C00050G00001,ACDUNK_1277.51397.83G0001,ACDUNK_1277.51397.83_1 id=17084 tax=ACD1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
ACD1_50_2
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(502..873)
DNA (372bp) protein (124aa)
seg (db=Seg db_id=seg from=105 to=110)
seg (db=Seg db_id=seg from=88 to=100)
seg (db=Seg db_id=seg from=37 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=101)
ACD1_50_3
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(982..1473)
DNA (492bp) protein (164aa)
Undecaprenyl pyrophosphate phosphatase
PAP2 superfamily protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IDZ6_ACIB4 (db=UNIREF evalue=5.0e-18 bit_score=93.2 identity=39.44 coverage=84.7560975609756)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=58)
ACD1_50_4
GWF1_OD1_34_10, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1572..1856)
DNA (285bp) protein (95aa)
Tax=GWF1_OD1_34_10
ACD1_50_5
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(2043..3383)
DNA (1341bp) protein (447aa)
radical SAM superfamily protein, UPF0063; K06941 ribosomal RNA large subunit methyltransferase N [EC:2.1.1.-] (db=KEGG evalue=5.0e-10 bit_score=69.3 identity=28.21 coverage=41.3870246085011)
radical SAM superfamily protein, UPF0063; K06941 ribosomal RNA large subunit methyltransferase N [EC:2.1.1.-] alias=ACD1_C00050G00005,ACDUNK_1277.51397.83G0005,ACDUNK_1277.51397.83_5 id=17079 tax=ACD1 species=Gramella forsetii genus=Gramella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=OD1-i organism_desc=OD1-i
ACD1_50_6

Not on your lists

comp(3515..5068)
DNA (1554bp) protein (518aa)
PAS domain-containing protein
Sensor protein n=1 Tax=Bacillus anthracis Tsiankovskii-I RepID=B3J1P7_BACAN (db=UNIREF evalue=5.0e-34 bit_score=149.0 identity=29.54 coverage=94.5945945945946)
seg (db=Seg db_id=seg from=470 to=483)
seg (db=Seg db_id=seg from=118 to=129)
ACD1_50_7
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

comp(5202..5909)
DNA (708bp) protein (236aa)
RNA polymerase subunit sigma-24
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=86 to=117 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=59 to=223 evalue=1.2e-42 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=38 to=149 evalue=2.2e-21 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD1_50_8
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(6082..6756)
DNA (675bp) protein (225aa)
two component transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR (db=KEGG evalue=1.0e-56 bit_score=222.0 identity=49.77 coverage=96.8888888888889)
no description (db=HMMSmart db_id=SM00448 from=1 to=114 evalue=3.5e-38 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=1 to=189 evalue=5.0e-37 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=1 to=120 evalue=5.8e-33)
ACD1_50_9

Not on your lists

comp(7064..8428)
DNA (1365bp) protein (455aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3P8V0_DEFDS (db=UNIREF evalue=2.0e-56 bit_score=224.0 identity=32.44 coverage=96.4835164835165)
DISULFIDE OXIDOREDUCTASE (db=HMMPanther db_id=PTHR22912 from=5 to=445 evalue=4.2e-70)
NADH OXIDASE-RELATED (db=HMMPanther db_id=PTHR22912:SF2 from=5 to=445 evalue=4.2e-70)
ACD1_50_10
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(8596..9528)
DNA (933bp) protein (311aa)
parB-like partition protein
parB_part: ParB-like partition proteins (db=HMMTigr db_id=TIGR00180 from=52 to=232 evalue=3.8e-52 interpro_id=IPR004437 interpro_description=ParB-like partition protein GO=Molecular Function: DNA binding (GO:0003677))
ParB/Sulfiredoxin (db=superfamily db_id=SSF110849 from=54 to=192 evalue=5.1e-35 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00470 from=57 to=146 evalue=1.7e-30 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
ACD1_50_11

Not on your lists

comp(9660..10460)
DNA (801bp) protein (267aa)
chromosome partitioning protein ParA
seg (db=Seg db_id=seg from=117 to=129)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=254 evalue=4.3e-66)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=249 evalue=3.6e-58)
ACD1_50_12
GWC1_OD1_36_108, Parcubacteria, Bacteria

Not on your lists

comp(10941..11897)
DNA (957bp) protein (319aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=256 to=278)
seg (db=Seg db_id=seg from=265 to=277)
Uncharacterized protein {ECO:0000313|EMBL:KKP89783.1}; TaxID=1618894 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_36_108.;"
ACD1_50_13

Not on your lists

comp(11997..12929)
DNA (933bp) protein (311aa)
Uncharacterized protein {ECO:0000313|EMBL:EKE18912.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD1_50_14
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(13103..14860)
DNA (1758bp) protein (586aa)
Na(+)/H(+) antiporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=235 to=257)
transmembrane_regions (db=TMHMM db_id=tmhmm from=277 to=299)
transmembrane_regions (db=TMHMM db_id=tmhmm from=353 to=375)
ACD1_50_15

Not on your lists

comp(14898..16523)
DNA (1626bp) protein (542aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=236 to=258)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=104)
ACD1_50_16
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(17452..17940)
DNA (489bp) protein (163aa)
seg (db=Seg db_id=seg from=108 to=121)
seg (db=Seg db_id=seg from=91 to=103)
ACD1_50_17

Not on your lists

comp(18503..18955)
DNA (453bp) protein (151aa)
ATP synthase F1 subunit epsilon
seg (db=Seg db_id=seg from=98 to=113)
coiled-coil (db=Coil db_id=coil from=99 to=120 evalue=NA)
ATP_synt_epsi: ATP synthase F1, epsilon (db=HMMTigr db_id=TIGR01216 from=9 to=139 evalue=7.0e-27 interpro_id=IPR001469 interpro_description=ATPase, F1 complex, delta/epsilon subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activit
ACD1_50_18

Not on your lists

comp(19067..20473)
DNA (1407bp) protein (469aa)
atpD; ATP synthase F0F1 subunit beta (EC:3.6.3.14)
atpD; ATP synthase F0F1 subunit beta (EC:3.6.3.14)
ATP synthase F1, beta subunit n=1 Tax=bacterium S5 RepID=D3BYJ4_9BACT (db=UNIREF evalue=0.0 bit_score=645.0 identity=70.6 coverage=96.1620469083156)
seg (db=Seg db_id=seg from=153 to=168)
ACD1_50_19
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(22291..22686)
DNA (396bp) protein (132aa)

This feature has no annotations

ACD1_50_20
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(22985..23389)
DNA (405bp) protein (135aa)

This feature has no annotations

ACD1_50_21
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(23815..24564)
DNA (750bp) protein (250aa)
ATP synthase F1 subunit gamma (EC:3.6.3.14)
seg (db=Seg db_id=seg from=111 to=124)
ATP SYNTHASE GAMMA CHAIN, SODIUM ION SPECIFIC (db=HMMPanther db_id=PTHR11693:SF10 from=2 to=249 evalue=2.7e-65)
ATP SYNTHASE GAMMA CHAIN (db=HMMPanther db_id=PTHR11693 from=2 to=249 evalue=2.7e-65 interpro_id=IPR000131 interpro_description=ATPase, F1 complex, gamma subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotational mechan
ACD1_50_22
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(24978..26480)
DNA (1503bp) protein (501aa)
ATP synthase subunit alpha n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=ATPA_CARHZ (db=UNIREF evalue=0.0 bit_score=682.0 identity=65.64 coverage=97.4051896207585)
ATP synthase F1 subunit alpha (EC:3.6.3.14)
ATP synthase F1 subunit alpha (EC:3.6.3.14)
atpA: ATP synthase F1, alpha subunit (db=HMMTigr db_id=TIGR00962 from=1 to=500 evalue=0.0 interpro_id=IPR005294 interpro_description=ATPase, F1 complex, alpha subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotational m
ACD1_50_23
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(26482..26682)
DNA (201bp) protein (67aa)

This feature has no annotations

ACD1_50_24
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(26798..27058)
DNA (261bp) protein (87aa)

This feature has no annotations

ACD1_50_25
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(27487..27888)
DNA (402bp) protein (134aa)
atpH; ATP synthase F1, delta subunit (EC:3.6.3.14)
F0F1 ATP synthase subunit delta n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R953_WEIPA (db=UNIREF evalue=3.0e-11 bit_score=70.5 identity=29.51 coverage=86.5671641791045)
ATPASE_DELTA (db=PatternScan db_id=PS00389 from=93 to=112 evalue=0.0 interpro_id=IPR020781 interpro_description=ATPase, F1 complex, OSCP/delta subunit, conserved site GO=Cellular Component: plasma membrane (GO:0005886), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
OSCP (db=HMMPfam db_id=PF00213 from=3 to=131 evalue=1.1e-26 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Cellular Component: plasma membrane (GO:0005886), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
ACD1_50_26

Not on your lists

comp(27950..28231)
DNA (282bp) protein (94aa)
excinuclease ABC subunit C
Excinuclease ABC C subunit domain protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJC7_9PROT (db=UNIREF evalue=1.0e-26 bit_score=122.0 identity=63.83 coverage=97.8723404255319)
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=2 to=90 evalue=6.2e-19 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=3 to=73 evalue=6.3e-11 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD1_50_27

Not on your lists

comp(28304..28792)
DNA (489bp) protein (163aa)
ATP synthase F0 sector subunit b
ATP synthase subunit b n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTG5_9GAMM (db=UNIREF evalue=2.0e-17 bit_score=90.9 identity=38.46 coverage=87.1165644171779)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
coiled-coil (db=Coil db_id=coil from=103 to=124 evalue=NA)
ACD1_50_28
GWC1_OD1_36_108, Parcubacteria, Bacteria

Not on your lists

comp(29249..29482)
DNA (234bp) protein (78aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
seg (db=Seg db_id=seg from=22 to=37)
ATPASE_C (db=PatternScan db_id=PS00605 from=42 to=63 evalue=0.0 interpro_id=IPR020537 interpro_description=ATPase, F0 complex, subunit C, DCCD-binding site)
ACD1_50_29

Not on your lists

comp(30119..30979)
DNA (861bp) protein (287aa)
ATP synthase F0 subunit A
transmembrane_regions (db=TMHMM db_id=tmhmm from=228 to=250)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
Contig binned based on OD1_iv affiliation, then coverage Jill Banfield (11/15/12)
ACD1_50_30

Not on your lists

comp(31097..31375)
DNA (279bp) protein (93aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
Uncharacterized protein {ECO:0000313|EMBL:EKD58262.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 47 in total

View Taxonomy