Alias: ACD22_10119.10662.19
name | lists | location/seqs | annotations | notes |
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ACD22_73_1
uncultured bacterium, Bacteria
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Not on your lists |
comp(2..328)
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hypothetical protein
Transcription antitermination protein NusB n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E8X2_9LACO (db=UNIREF evalue=2.0e-11 bit_score=71.2 identity=35.58 coverage=92.6605504587156)
NusB (db=HMMPfam db_id=PF01029 from=9 to=109 evalue=4.2e-21 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
NusB-like (db=superfamily db_id=SSF48013 from=7 to=109 evalue=4.0e-19 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD22_73_2
uncultured bacterium, Bacteria
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Not on your lists |
comp(344..490)
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Ribosomal_L32p (db=HMMPfam db_id=PF01783 from=2 to=41 evalue=5.6e-05 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Uncharacterized protein {ECO:0000313|EMBL:EKE00511.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD22_73_3
uncultured bacterium, Bacteria
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Not on your lists |
1440..1853
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seg (db=Seg db_id=seg from=12 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=83 to=132)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=8 to=28 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
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ACD22_73_4
uncultured bacterium, Bacteria
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Not on your lists |
comp(1946..2527)
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RNA methyltransferase, RsmD family
Cons_hypoth95 (db=HMMPfam db_id=PF03602 from=14 to=189 evalue=5.4e-36 interpro_id=IPR004398 interpro_description=Conserved hypothetical protein CHP00095)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=14 to=192 evalue=3.4e-35)
Predicted methylase, YhhF type (db=HMMPIR db_id=PIRSF004553 from=5 to=193 evalue=3.4e-29 interpro_id=IPR004398 interpro_description=Conserved hypothetical protein CHP00095)
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ACD22_73_5
uncultured bacterium, Bacteria
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Not on your lists |
comp(2549..3127)
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hypothetical protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=167 evalue=3.7e-35)
no description (db=HMMSmart db_id=SM00490 from=5 to=90 evalue=3.5e-21 interpro_id=IPR001650 interpro_description=DNA/RNA helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524))
Helicase_C (db=HMMPfam db_id=PF00271 from=18 to=89 evalue=1.7e-15 interpro_id=IPR001650 interpro_description=DNA/RNA helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524))
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ACD22_73_6
uncultured bacterium, Bacteria
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Not on your lists |
4041..4319
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4041..4319 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE00500.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD22_73_7
uncultured bacterium, Bacteria
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Not on your lists |
comp(5028..5153)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
seg (db=Seg db_id=seg from=21 to=36)
Uncharacterized protein {ECO:0000313|EMBL:EKE00501.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD22_73_8
uncultured bacterium, Bacteria
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Not on your lists |
comp(5157..5342)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=57)
seg (db=Seg db_id=seg from=7 to=20)
Uncharacterized protein {ECO:0000313|EMBL:EKE00502.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD22_73_9
uncultured bacterium, Bacteria
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Not on your lists |
comp(5354..6607)
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hypothetical protein
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=47 to=57 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
TYROSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11766 from=7 to=417 evalue=3.3e-86 interpro_id=IPR002307 interpro_description=Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437))
tyrS: tyrosyl-tRNA synthetase (db=HMMTigr db_id=TIGR00234 from=5 to=417 evalue=2.7e-78 interpro_id=IPR002307 interpro_description=Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437))
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ACD22_73_10
uncultured bacterium, Bacteria
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Not on your lists |
comp(6623..7801)
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ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VWU4_DYAFD (db=UNIREF evalue=6.0e-112 bit_score=407.0 identity=50.51 coverage=98.7277353689567)
ATPase
ATPase
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=183 evalue=1.8e-21)
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ACD22_73_11
uncultured bacterium, Bacteria
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Not on your lists |
comp(7851..10127)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=18 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=727 to=749)
seg (db=Seg db_id=seg from=18 to=32)
seg (db=Seg db_id=seg from=189 to=202)
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ACD22_73_12
uncultured bacterium, Bacteria
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Not on your lists |
10533..10700
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=9 to=25)
Uncharacterized protein {ECO:0000313|EMBL:EKE00506.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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