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ACD22_103

Alias: ACD22_15834.2384.18

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Displaying 4 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD22_103_1

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23..715
DNA (693bp) protein (231aa)
hypothetical protein
Ribonuclease III n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5R1Z7_9FIRM (db=UNIREF evalue=2.0e-42 bit_score=175.0 identity=46.49 coverage=97.8354978354978)
seg (db=Seg db_id=seg from=215 to=224)
RNASE_3_1 (db=PatternScan db_id=PS00517 from=46 to=54 evalue=0.0 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
ACD22_103_2

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779..1102
DNA (324bp) protein (108aa)
hypothetical protein
RIBOSOMAL_S16 (db=PatternScan db_id=PS00732 from=3 to=12 evalue=0.0 interpro_id=IPR020592 interpro_description=Ribosomal protein S16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S16: ribosomal protein S16 (db=HMMTigr db_id=TIGR00002 from=3 to=80 evalue=7.6e-24 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S16 (db=superfamily db_id=SSF54565 from=2 to=83 evalue=8.2e-21 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD22_103_3

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1099..1377
DNA (279bp) protein (93aa)
seg (db=Seg db_id=seg from=16 to=28)
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=6 to=65 evalue=4.2e-07 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
KH_1 (db=HMMPfam db_id=PF00013 from=34 to=66 evalue=7.2e-07 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))
no description (db=HMMSmart db_id=SM00322 from=30 to=86 evalue=0.0024 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))
ACD22_103_4

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comp(2059..2424)
DNA (366bp) protein (122aa)
seg (db=Seg db_id=seg from=109 to=121)
Uncharacterized protein {ECO:0000313|EMBL:EKE00378.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 4 items

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