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ACD22_108

Alias: ACD22_20957.13418.19

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD22_108_1

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975..2285
DNA (1311bp) protein (437aa)
seg (db=Seg db_id=seg from=322 to=339)
seg (db=Seg db_id=seg from=193 to=204)
transmembrane_regions (db=TMHMM db_id=tmhmm from=290 to=312)
Uncharacterized protein {ECO:0000313|EMBL:EKE00213.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD22_108_2

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2301..2597
DNA (297bp) protein (99aa)
hypothetical protein
Putative uncharacterized protein n=3 Tax=Eubacterium siraeum RepID=B0MS04_9FIRM (db=UNIREF evalue=2.0e-19 bit_score=98.2 identity=50.0 coverage=85.8585858585859)
Uncharacterized protein {ECO:0000313|EMBL:EKE00214.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD22_108_3

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2625..3083
DNA (459bp) protein (153aa)
50S ribosomal protein L21
seg (db=Seg db_id=seg from=116 to=152)
L21p-like (db=superfamily db_id=SSF141091 from=4 to=100 evalue=2.6e-23)
Ribosomal_L21p (db=HMMPfam db_id=PF00829 from=5 to=91 evalue=1.1e-20 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD22_108_4

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3083..3349
DNA (267bp) protein (89aa)
50S ribosomal protein L27
RIBOSOMAL_L27 (db=PatternScan db_id=PS00831 from=35 to=49 evalue=0.0 interpro_id=IPR018261 interpro_description=Ribosomal protein L27, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L27 (db=HMMPfam db_id=PF01016 from=2 to=82 evalue=2.7e-28 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L27 (db=HMMPanther db_id=PTHR15893 from=7 to=85 evalue=1.1e-24 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD22_108_5

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comp(3390..3941)
DNA (552bp) protein (184aa)
hypothetical protein
Signal peptidase I n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L3B8_9BACT (db=UNIREF evalue=9.0e-29 bit_score=129.0 identity=37.58 coverage=85.3260869565217)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
SPASE_I_3 (db=PatternScan db_id=PS00761 from=141 to=154 evalue=0.0 interpro_id=IPR019758 interpro_description=Peptidase S26A, signal peptidase I, conserved site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
ACD22_108_6

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4634..4729
DNA (96bp) protein (32aa)
4634..4729 + (rbs_motif=ATAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE00205.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD22_108_7

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5321..5425
DNA (105bp) protein (35aa)
5321..5425 + (rbs_motif=TATA rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE00206.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD22_108_8

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5403..6620
DNA (1218bp) protein (406aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GF65_9DELT (db=UNIREF evalue=3.0e-17 bit_score=93.2 identity=27.2 coverage=74.6305418719212)
seg (db=Seg db_id=seg from=2 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=127 to=382 evalue=1.0e-14 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
ACD22_108_9

Not on your lists

6617..7903
DNA (1287bp) protein (429aa)
Membrane protein involved in the export of O-antigen and teichoic acid
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=336 to=350)
seg (db=Seg db_id=seg from=304 to=331)
ACD22_108_10

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7887..9086
DNA (1200bp) protein (400aa)
O-antigen polymerase
O-antigen polymerase n=5 Tax=Veillonella RepID=D1BNH3_VEIPT (db=UNIREF evalue=5.0e-16 bit_score=89.4 identity=27.0 coverage=71.75)
seg (db=Seg db_id=seg from=243 to=252)
transmembrane_regions (db=TMHMM db_id=tmhmm from=375 to=397)
ACD22_108_11

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comp(9064..9816)
DNA (753bp) protein (251aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
seg (db=Seg db_id=seg from=145 to=156)
Bacillopeptidase F {ECO:0000313|EMBL:EKE00210.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD22_108_12

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comp(9821..10837)
DNA (1017bp) protein (339aa)
hypothetical protein
GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF14 from=50 to=336 evalue=5.4e-69)
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE (db=HMMPanther db_id=PTHR22572 from=50 to=336 evalue=5.4e-69)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=31 to=310 evalue=4.7e-52)
ACD22_108_13

Not on your lists

10846..13458
DNA (2613bp) protein (871aa)
Ig domain-containing protein
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUX8_9BACT (db=UNIREF evalue=3.0e-11 bit_score=74.7 identity=23.22 coverage=52.9276693455798)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
seg (db=Seg db_id=seg from=379 to=386)
Displaying 13 items

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