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ACD22_123

Alias: ACD22_132980.2903.5

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD22_123_1
R_Gammaproteobacteria_41_20, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..196)
DNA (195bp) protein (65aa)
50S ribosomal protein L1
no description (db=Gene3D db_id=G3DSA:3.30.190.20 from=2 to=65 evalue=9.8e-14 interpro_id=IPR016094 interpro_description=Ribosomal protein L1, 2-layer alpha/beta-sandwich GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L1 (db=superfamily db_id=SSF56808 from=6 to=65 evalue=3.5e-11 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
50S RIBOSOMAL PROTEIN L1P (db=HMMPanther db_id=PTHR23105:SF5 from=21 to=65 evalue=4.3e-11)
ACD22_123_2

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comp(201..644)
DNA (444bp) protein (148aa)
rplK; 50S ribosomal protein L11
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=131 to=146 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=6 to=146 evalue=7.2e-90 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=HMMSmart db_id=SM00649 from=12 to=145 evalue=2.0e-77 interpro_id=IPR000911 interpro_description=Ribosomal protein L11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD22_123_3

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comp(709..1263)
DNA (555bp) protein (185aa)
nusG; transcription antitermination protein NusG
NUSG (db=PatternScan db_id=PS01014 from=167 to=176 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=12 to=184 evalue=1.6e-93 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=9 to=118 evalue=2.1e-44 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD22_123_4

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comp(1290..1712)
DNA (423bp) protein (141aa)
secE; Preprotein translocase subunit secE
Preprotein translocase subunit SecE n=2 Tax=Photobacterium RepID=D0Z0N4_LISDA (db=UNIREF evalue=3.0e-20 bit_score=100.0 identity=47.11 coverage=85.1063829787234)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
seg (db=Seg db_id=seg from=34 to=45)
ACD22_123_5
Fusobacterium varium, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(1910..2935)
DNA (1026bp) protein (342aa)
Elongation factor Tu n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BT50_9GAMM (db=UNIREF evalue=2.0e-143 bit_score=511.0 identity=73.9 coverage=91.2280701754386)
tuf; elongation factor Tu (EC:3.6.5.3)
tuf; elongation factor Tu (EC:3.6.5.3)
EF-Tu: translation elongation factor Tu (db=HMMTigr db_id=TIGR00485 from=1 to=341 evalue=1.8e-163 interpro_id=IPR004541 interpro_description=Translation elongation factor EFTu/EF1A, bacterial/organelle GO=Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Displaying 5 items

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