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ACD24_220

Alias: ACD24_2232.5185.19

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD24_220_1

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comp(2..358)
-----------------
DNA (357bp)
protein (119aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=49 to=61)
ACD24_220_2
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(351..800)
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein
seg (db=Seg db_id=seg from=17 to=28)
seg (db=Seg db_id=seg from=113 to=128)
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=113 to=143 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_220_3
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(1294..1641)
-----------------
DNA (348bp)
protein (116aa)
rplR; 50S ribosomal protein L18
seg (db=Seg db_id=seg from=68 to=84)
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=3 to=115 evalue=2.2e-42 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L18p (db=HMMPfam db_id=PF00861 from=3 to=115 evalue=4.6e-33 interpro_id=IPR005484 interpro_description=Ribosomal protein L18/L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_220_4

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comp(1655..2194)
-----------------
DNA (540bp)
protein (180aa)
50S ribosomal protein L6
50S ribosomal protein L6 n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SFG5_9CAUL (db=UNIREF evalue=2.0e-49 bit_score=198.0 identity=56.0 coverage=96.6666666666667)
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=154 to=162 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=176 evalue=2.1e-97 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD24_220_5
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(2200..2598)
-----------------
DNA (399bp)
protein (133aa)
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLF7_9PLAN (db=UNIREF evalue=1.0e-24 bit_score=115.0 identity=41.35 coverage=97.7443609022556)
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=102 to=119 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=4 to=132 evalue=3.4e-38 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_220_6

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comp(2603..2788)
-----------------
DNA (186bp)
protein (62aa)
rpsZ; 30S ribosomal protein S14
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=23 to=45 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=1 to=61 evalue=1.2e-26 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S14 (db=HMMPfam db_id=PF00253 from=11 to=60 evalue=6.7e-22 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_220_7
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(2791..3336)
-----------------
DNA (546bp)
protein (182aa)
rplE; 50S ribosomal protein L5
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=3 to=180 evalue=9.7e-67)
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=3 to=180 evalue=9.7e-67 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L5 (db=superfamily db_id=SSF55282 from=1 to=180 evalue=1.7e-60 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_220_8
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(3378..3695)
-----------------
DNA (318bp)
protein (106aa)
50S ribosomal protein L24
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=6 to=23 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=101 evalue=6.6e-47 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=1 to=103 evalue=7.1e-38 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_220_9
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(3711..4076)
-----------------
DNA (366bp)
protein (122aa)
hypothetical protein
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=59 to=85 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=121 evalue=7.4e-56 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=1 to=121 evalue=5.8e-50 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_220_10
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(4078..4332)
-----------------
DNA (255bp)
protein (85aa)
30S ribosomal protein S17
Ribosomal_S17 (db=HMMPfam db_id=PF00366 from=10 to=77 evalue=4.3e-21 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=4 to=83 evalue=1.8e-20 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=3 to=79 evalue=3.3e-20 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD24_220_11
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(4319..4534)
-----------------
DNA (216bp)
protein (72aa)
coiled-coil (db=Coil db_id=coil from=3 to=39 evalue=NA)
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=1 to=60 evalue=1.7e-12 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=4 to=60 evalue=2.2e-12 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:1.10.287.310 from=1 to=67 evalue=1.1e-08 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_220_12
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(4641..5048)
-----------------
DNA (408bp)
protein (136aa)
rplP; 50S ribosomal protein L16
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=59 to=70 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=6.3e-70 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S/60S RIBOSOMAL PROTEIN L16 (db=HMMPanther db_id=PTHR12220:SF11 from=1 to=135 evalue=1.4e-51)
ACD24_220_13
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(5068..5223)
-----------------
DNA (156bp)
protein (52aa)
rpsC; 30S ribosomal protein S3
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=5 to=39 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S/40S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760 from=4 to=48 evalue=1.1e-16)
Ribosomal_S3_C (db=HMMPfam db_id=PF00189 from=1 to=44 evalue=1.3e-14 interpro_id=IPR001351 interpro_description=Ribosomal protein S3, C-terminal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 13 items

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