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ACD25_28

Alias: ACD25_334125.10414.6

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD25_28_1
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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2..502
DNA (501bp) protein (167aa)
Zn-dependent hydrolase of the beta-lactamase fold-like protein
Zn-dependent hydrolase of the beta-lactamase fold-like protein n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UXX6_ROSS1 (db=UNIREF evalue=8.0e-33 bit_score=142.0 identity=44.64 coverage=96.4071856287425)
seg (db=Seg db_id=seg from=136 to=147)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=13 to=115 evalue=4.3e-11)
ACD25_28_2
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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508..1311
DNA (804bp) protein (268aa)
hypothetical protein
N-terminal domain of DnaB helicase (db=superfamily db_id=SSF48024 from=20 to=133 evalue=5.6e-38 interpro_id=IPR007693 interpro_description=DNA helicase, DnaB-like, N-terminal GO=Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
DnaB (db=HMMPfam db_id=PF00772 from=22 to=123 evalue=1.8e-36 interpro_id=IPR007693 interpro_description=DNA helicase, DnaB-like, N-terminal GO=Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
no description (db=Gene3D db_id=G3DSA:1.10.860.10 from=23 to=125 evalue=9.0e-33 interpro_id=IPR016136 interpro_description=DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal)
ACD25_28_3
RBG_16_OP11_Woesebacteria_39_8b_curated, Woesebacteria, Microgenomates, Bacteria

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comp(1160..1645)
DNA (486bp) protein (162aa)
seg (db=Seg db_id=seg from=37 to=48)
seg (db=Seg db_id=seg from=104 to=130)
Tax=RBG_16_OP11_Woesebacteria_39_8b_curated
ACD25_28_4
RIFOXYC1_FULL_WWE3_42_17_curated, WWE3, Bacteria

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1750..2151
DNA (402bp) protein (134aa)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=130 evalue=3.8e-35)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=120 evalue=1.3e-25)
DnaB_C (db=HMMPfam db_id=PF03796 from=3 to=59 evalue=4.5e-23 interpro_id=IPR007694 interpro_description=DNA helicase, DnaB-like, C-terminal GO=Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
ACD25_28_5
GWB2_WWE3_43_22_part, WWE3, Bacteria

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2259..2942
DNA (684bp) protein (228aa)
hypothetical protein
seg (db=Seg db_id=seg from=69 to=83)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=25 to=224 evalue=1.8e-40)
DnaB_C (db=HMMPfam db_id=PF03796 from=25 to=153 evalue=2.9e-32 interpro_id=IPR007694 interpro_description=DNA helicase, DnaB-like, C-terminal GO=Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
ACD25_28_6
GWD2_WWE3_42_34, WWE3, Bacteria

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3264..3815
DNA (552bp) protein (184aa)
Elongation factor P
Elongation factor P n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9R3_9FIRM (db=UNIREF evalue=3.0e-37 bit_score=157.0 identity=43.78 coverage=98.9130434782609)
EFP (db=PatternScan db_id=PS01275 from=148 to=167 evalue=0.0 interpro_id=IPR013852 interpro_description=Translation elongation factor P/YeiP, conserved site)
efp: translation elongation factor P (db=HMMTigr db_id=TIGR00038 from=1 to=183 evalue=1.5e-79 interpro_id=IPR011768 interpro_description=Translation elongation factor P GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: cytoplasm (GO:0005737), Biological Process: translational elongation (GO:0006414))
ACD25_28_7
GWD2_WWE3_42_34, WWE3, Bacteria

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3818..4822
DNA (1005bp) protein (335aa)
DnaK suppressor protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=191 to=208)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=141 to=158)
ACD25_28_8

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4946..5131
DNA (186bp) protein (62aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
Peptidase_A8 (db=HMMPfam db_id=PF01252 from=2 to=58 evalue=5.2e-11 interpro_id=IPR001872 interpro_description=Peptidase A8, signal peptidase II GO=Molecular Function: aspartic-type endopeptidase activity (GO:0004190), Biological Process: proteolysis (GO:0006508), Cellular Component: membrane (GO:0016020))
LIPOSIGPTASE (db=FPrintScan db_id=PR00781 from=38 to=54 evalue=5.9e-05 interpro_id=IPR001872 interpro_description=Peptidase A8, signal peptidase II GO=Molecular Function: aspartic-type endopeptidase activity (GO:0004190), Biological Process: proteolysis (GO:0006508), Cellular Component: membrane (GO:0016020))
LIPOSIGPTASE (db=FPrintScan db_id=PR00781 from=6 to=21 evalue=5.9e-05 interpro_id=IPR001872 interpro_description=Peptidase A8, signal peptidase II GO=Molecular Function: aspartic-type endopeptidase activity (GO:0004190), Biological Process: proteolysis (GO:0006508), Cellular Component: membrane (GO:0016020))
ACD25_28_9
GWD2_WWE3_42_34, WWE3, Bacteria

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6023..7006
DNA (984bp) protein (328aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=21)
hypothetical protein
Tax=GWD2_WWE3_42_34
ACD25_28_10

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comp(7367..7483)
DNA (117bp) protein (39aa)
7367..7483 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD94932.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD25_28_11

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9171..9683
DNA (513bp) protein (171aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB40415.1}; TaxID=1394710 species="Bacteria; candidate division WWE3.;" source="candidate division WWE3 bacterium RAAC2_WWE3_1.;"
UniRef90_UPI00016B22CB hypothetical protein cdiviTM7_01505 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B22CB alias=RAAC2_WWE3_C00001G00470,RAAC2_WWE3_470 id=725517 tax=RAAC2_WWE3 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown organism_group=WWE3
ACD25_28_12

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9697..10446
DNA (750bp) protein (250aa)
50S ribosomal protein L7/L12 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A2 (db=UNIREF evalue=3.0e-16 bit_score=89.0 identity=36.84 coverage=44.8)
seg (db=Seg db_id=seg from=202 to=218)
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000313|EMBL:AHB40414.1}; TaxID=1394710 species="Bacteria; candidate division WWE3.;" source="candidate division WWE3 bacterium RAAC2_WWE3_1.;"
Displaying 12 items

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