ggKbase home page

ACD25_56

Alias: ACD25_99276.5983.7

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD25_56_1
RIFOXYC1_FULL_WWE3_42_17_curated, WWE3, Bacteria

Not on your lists

2..760
DNA (759bp) protein (253aa)
multidrug ABC transporter substrate-binding protein
seg (db=Seg db_id=seg from=32 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=181 to=203)
transmembrane_regions (db=TMHMM db_id=tmhmm from=132 to=154)
ACD25_56_2
RIFOXYC1_FULL_WWE3_42_17_curated, WWE3, Bacteria

Not on your lists

753..983
DNA (231bp) protein (77aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Uncharacterized protein Tax=RIFOXYC1_FULL_WWE3_42_17_curated
ACD25_56_3

Not on your lists

1079..2911
DNA (1833bp) protein (611aa)
hypothetical protein
hypothetical protein
Small GTP-binding protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT16_9BACT (db=UNIREF evalue=2.0e-179 bit_score=632.0 identity=54.61 coverage=98.0360065466449)
seg (db=Seg db_id=seg from=122 to=134)
ACD25_56_4
RIFOXYC1_FULL_WWE3_42_17_curated, WWE3, Bacteria

Not on your lists

3006..3152
DNA (147bp) protein (49aa)
3006..3152 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein Tax=RIFOXYC1_FULL_WWE3_42_17_curated
ACD25_56_5
GWC2_WWE3_41_23, WWE3, Bacteria

Not on your lists

3200..4246
DNA (1047bp) protein (349aa)
hypothetical protein
DEAD BOX ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967 from=2 to=347 evalue=5.6e-137)
ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967:SF51 from=2 to=347 evalue=5.6e-137)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=72 to=348 evalue=9.4e-70)
ACD25_56_6
RIFOXYC1_FULL_WWE3_42_17_curated, WWE3, Bacteria

Not on your lists

4348..4641
DNA (294bp) protein (98aa)
4348..4641 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein Tax=RIFOXYC1_FULL_WWE3_42_17_curated
ACD25_56_7
GWC2_WWE3_41_23, WWE3, Bacteria

Not on your lists

comp(4772..5500)
DNA (729bp) protein (243aa)
seg (db=Seg db_id=seg from=4 to=19)
seg (db=Seg db_id=seg from=100 to=109)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
DUF922 (db=HMMPfam db_id=PF06037 from=72 to=228 evalue=7.9e-15 interpro_id=IPR010321 interpro_description=Protein of unknown function DUF922, bacterial)
ACD25_56_8

Not on your lists

comp(5664..5864)
DNA (201bp) protein (67aa)
hypothetical protein
CSD (db=HMMPfam db_id=PF00313 from=1 to=63 evalue=6.1e-20 interpro_id=IPR002059 interpro_description=Cold-shock protein, DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Cold shock protein, CspA type (db=HMMPIR db_id=PIRSF002599 from=1 to=66 evalue=3.3e-18 interpro_id=IPR012156 interpro_description=Cold shock, CspA GO=Molecular Function: nucleic acid binding (GO:0003676))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=66 evalue=3.2e-16 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
Displaying 8 items

View Taxonomy