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ACD25_58

Alias: ACD25_170985.6560.7

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD25_58_1
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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1..162
DNA (162bp) protein (54aa)
seg (db=Seg db_id=seg from=24 to=50)
Ribosomal_L17 (db=HMMPfam db_id=PF01196 from=1 to=22 evalue=5.2e-05 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFOXYD2_FULL_WWE3_43_10_curated
rplQ; 50S ribosomal protein L17
ACD25_58_2
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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152..574
DNA (423bp) protein (141aa)
rplM; 50S ribosomal protein L13
seg (db=Seg db_id=seg from=83 to=96)
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=5 to=139 evalue=3.9e-55 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L13 (db=HMMPfam db_id=PF00572 from=16 to=139 evalue=9.2e-47 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_58_3
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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610..1044
DNA (435bp) protein (145aa)
hypothetical protein
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=15 to=144 evalue=1.2e-36 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Ribosomal_S9 (db=HMMPfam db_id=PF00380 from=21 to=144 evalue=1.0e-35 interpro_id=IPR000754 interpro_description=Ribosomal protein S9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=14 to=144 evalue=2.7e-33 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
ACD25_58_4
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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comp(1041..1316)
DNA (276bp) protein (92aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=66 evalue=4.1e-10 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=7 to=62 evalue=1.5e-08 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
HTH_3 (db=HMMPfam db_id=PF01381 from=8 to=60 evalue=4.4e-08 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=4 to=66 evalue=1.3e-07)
ACD25_58_5

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1379..2068
DNA (690bp) protein (230aa)
radC; DNA repair protein RadC
seg (db=Seg db_id=seg from=76 to=90)
UPF0758 (db=PatternScan db_id=PS01302 from=172 to=177 evalue=0.0 interpro_id=IPR020891 interpro_description=Uncharacterised protein family, RadC-like, conserved site)
radc: DNA repair protein RadC (db=HMMTigr db_id=TIGR00608 from=11 to=223 evalue=9.9e-69 interpro_id=IPR001405 interpro_description=Uncharacterised protein family, RadC-like)
ACD25_58_6
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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2065..2658
DNA (594bp) protein (198aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein Tax=RIFOXYD2_FULL_WWE3_43_10_curated
hypothetical protein
ACD25_58_7
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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2727..3128
DNA (402bp) protein (134aa)
hypothetical protein
Peptidase S26B, signal peptidase n=1 Tax=Thermoproteus neutrophilus V24Sta RepID=B1YDQ5_THENV (db=UNIREF evalue=1.0e-12 bit_score=75.5 identity=42.22 coverage=66.4179104477612)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=5 to=96 evalue=6.8e-08 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
SIGNALPTASE (db=FPrintScan db_id=PR00728 from=68 to=79 evalue=1.4e-06 interpro_id=IPR001733 interpro_description=Peptidase S26B, eukaryotic signal peptidase GO=Biological Process: signal peptide processing (GO:0006465), Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233), Cellular Component: membrane (GO:0016020))
ACD25_58_8
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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3141..3785
DNA (645bp) protein (215aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=122)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
seg (db=Seg db_id=seg from=108 to=121)
ACD25_58_9
RIFOXYD2_FULL_WWE3_43_10_curated, WWE3, Bacteria

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3730..5808
DNA (2079bp) protein (693aa)
hypothetical protein
hypothetical protein
Clp protease ATP binding subunit n=2 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FG52_SACEN (db=UNIREF evalue=3.0e-112 bit_score=409.0 identity=37.54 coverage=81.0966810966811)
seg (db=Seg db_id=seg from=68 to=82)
ACD25_58_10
GWB2_WWE3_43_22_part, WWE3, Bacteria

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5837..6592
DNA (756bp) protein (252aa)
hypothetical protein
seg (db=Seg db_id=seg from=196 to=213)
coiled-coil (db=Coil db_id=coil from=66 to=87 evalue=NA)
RF_PROK_I (db=PatternScan db_id=PS00745 from=216 to=232 evalue=0.0 interpro_id=IPR000352 interpro_description=Class I peptide chain release factor GO=Molecular Function: translation release factor activity (GO:0003747), Biological Process: translational termination (GO:0006415))
Displaying 10 items

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