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ACD25_93

Alias: ACD25_403331.1985.7

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD25_93_1
GWD2_WWE3_42_34, WWE3, Bacteria

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comp(29..661)
DNA (633bp) protein (211aa)
rpsC; 30S ribosomal protein S3
coiled-coil (db=Coil db_id=coil from=84 to=105 evalue=NA)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=164 to=198 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=209 evalue=2.1e-85 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD25_93_2

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comp(665..1018)
DNA (354bp) protein (118aa)
rplV; 50S ribosomal protein L22
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=8 to=110 evalue=2.4e-31 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=8 to=111 evalue=1.1e-29 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=4 to=113 evalue=1.1e-28 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_93_3

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comp(1024..1248)
DNA (225bp) protein (75aa)
rpsS; ribosomal protein S19
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=38 to=62 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=72 evalue=1.6e-35 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=74 evalue=1.1e-33 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_93_4
GWD2_WWE3_42_34, WWE3, Bacteria

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comp(1300..1536)
DNA (237bp) protein (79aa)
rplB; 50S ribosomal protein L2
50S RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691:SF5 from=1 to=78 evalue=1.3e-13 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=1 to=78 evalue=1.3e-13 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L2_C (db=HMMPfam db_id=PF03947 from=2 to=52 evalue=3.4e-12 interpro_id=IPR022669 interpro_description=Ribosomal protein L2, C-terminal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_93_5

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1769..2017
DNA (249bp) protein (83aa)
1769..2017 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD94870.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 5 items

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