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ACD25_115

Alias: ACD25_15571.4221.7

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD25_115_1

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1..198
DNA (198bp) protein (66aa)
hypothetical protein
GTP_EFTU_D3 (db=HMMPfam db_id=PF03143 from=1 to=63 evalue=5.3e-23 interpro_id=IPR004160 interpro_description=Translation elongation factor EFTu/EF1A, C-terminal GO=Molecular Function: GTP binding (GO:0005525))
no description (db=Gene3D db_id=G3DSA:2.40.30.10 from=1 to=65 evalue=3.2e-20)
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain (db=superfamily db_id=SSF50465 from=1 to=65 evalue=3.8e-19 interpro_id=IPR009001 interpro_description=Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal)
ACD25_115_2
RIFOXYC1_FULL_WWE3_42_13_curated, WWE3, Bacteria

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318..509
DNA (192bp) protein (64aa)
hypothetical protein
30S RIBOSOMAL PROTEIN S10 (db=HMMPanther db_id=PTHR11700:SF2 from=1 to=63 evalue=6.3e-28 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER (db=HMMPanther db_id=PTHR11700 from=1 to=63 evalue=6.3e-28 interpro_id=IPR001848 interpro_description=Ribosomal protein S10 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S10 (db=HMMPfam db_id=PF00338 from=1 to=62 evalue=1.3e-22 interpro_id=IPR001848 interpro_description=Ribosomal protein S10 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_115_3
RIFOXYC1_FULL_WWE3_42_17_curated, WWE3, Bacteria

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699..836
DNA (138bp) protein (46aa)
hypothetical protein
GTP_EFTU_D3 (db=HMMPfam db_id=PF03143 from=1 to=43 evalue=1.0e-17 interpro_id=IPR004160 interpro_description=Translation elongation factor EFTu/EF1A, C-terminal GO=Molecular Function: GTP binding (GO:0005525))
no description (db=Gene3D db_id=G3DSA:2.40.30.10 from=1 to=45 evalue=1.3e-13)
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain (db=superfamily db_id=SSF50465 from=1 to=45 evalue=1.5e-12 interpro_id=IPR009001 interpro_description=Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal)
ACD25_115_4
GWC2_WWE3_41_23, WWE3, Bacteria

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890..1210
DNA (321bp) protein (107aa)
hypothetical protein
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=33 to=48 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=8 to=106 evalue=5.0e-58 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 (db=HMMPanther db_id=PTHR11700:SF2 from=9 to=106 evalue=3.1e-49 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD25_115_5
GWD2_WWE3_42_34, WWE3, Bacteria

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1373..1999
DNA (627bp) protein (209aa)
rplC; 50S ribosomal protein L3
Translation proteins (db=superfamily db_id=SSF50447 from=106 to=205 evalue=6.9e-36 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=7 to=206 evalue=2.3e-35)
Ribosomal_L3 (db=HMMPfam db_id=PF00297 from=106 to=205 evalue=5.6e-24 interpro_id=IPR000597 interpro_description=Ribosomal protein L3 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_115_6
GWD2_WWE3_42_34, WWE3, Bacteria

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2001..2624
DNA (624bp) protein (208aa)
50S ribosomal protein L4
50S ribosomal protein L4 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3776E (db=UNIREF evalue=9.0e-39 bit_score=163.0 identity=43.78 coverage=96.1538461538462)
seg (db=Seg db_id=seg from=98 to=107)
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=205 evalue=5.0e-63 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_115_7
GWD2_WWE3_42_34, WWE3, Bacteria

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2621..2911
DNA (291bp) protein (97aa)
50S ribosomal protein L23
RIBOSOMAL_L23 (db=PatternScan db_id=PS00050 from=78 to=93 evalue=0.0 interpro_id=IPR001014 interpro_description=Ribosomal protein L23/L25, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=5 to=95 evalue=6.0e-22 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=95 evalue=9.0e-22 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_115_8
GWB2_WWE3_43_22_part, WWE3, Bacteria

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2914..3879
DNA (966bp) protein (322aa)
rplB; 50S ribosomal protein L2
seg (db=Seg db_id=seg from=190 to=200)
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=2 to=318 evalue=1.6e-121 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
Ribosomal protein, L2p/L2a/L8e/organellar L2 types (db=HMMPIR db_id=PIRSF002158 from=2 to=316 evalue=2.0e-87 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD25_115_9

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3950..4219
DNA (270bp) protein (90aa)
rpsS; ribosomal protein S19
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=87 evalue=5.8e-50 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=89 evalue=1.4e-38 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 9 items

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