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ACD26_45

Alias: ACD26_21243.2210.4

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD26_45_1

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comp(3..110)
DNA (108bp) protein (36aa)
3..110 - (rbs_motif=TAATTT rbs_spacer=13bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD94403.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD26_45_2

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comp(180..404)
DNA (225bp) protein (75aa)
180..404 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD94404.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD26_45_3

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comp(412..783)
DNA (372bp) protein (124aa)
412..783 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD94405.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD26_45_4

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comp(785..1093)
DNA (309bp) protein (103aa)
785..1093 - (rbs_motif=TAATTT rbs_spacer=15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD94406.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD26_45_5

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comp(1128..1472)
DNA (345bp) protein (115aa)
1128..1472 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD94407.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD26_45_6

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comp(1512..2057)
DNA (546bp) protein (182aa)
antitermination protein NusG
NUSG (db=PatternScan db_id=PS01014 from=164 to=173 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=9 to=181 evalue=3.7e-83 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=6 to=115 evalue=1.7e-42 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD26_45_7

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comp(2085..2243)
DNA (159bp) protein (53aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
SecE (db=HMMPfam db_id=PF00584 from=1 to=47 evalue=1.6e-15 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=1 to=49 evalue=4.4e-05 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
Uncharacterized protein {ECO:0000313|EMBL:EKD94409.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 7 items

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