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ACD11_9

Alias: ACD11_4244.102628.29

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Displaying items 91-105 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD11_9_91

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87783..88268
DNA (486bp) protein (162aa)
seg (db=Seg db_id=seg from=108 to=121)
seg (db=Seg db_id=seg from=67 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=137 to=159)
transmembrane_regions (db=TMHMM db_id=tmhmm from=95 to=117)
ACD11_9_92

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88479..88736
DNA (258bp) protein (86aa)
endonuclease
Excinuclease ABC, C subunit (Fragment) n=2 Tax=Sphingobacterium spiritivorum RepID=C2FRP5_9SPHI (db=UNIREF evalue=1.0e-11 bit_score=72.0 identity=48.1 coverage=86.046511627907)
GIY-YIG (db=HMMPfam db_id=PF01541 from=3 to=72 evalue=3.5e-15 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=77 evalue=1.9e-09 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD11_9_93

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89540..90598
DNA (1059bp) protein (353aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=131 to=145)
Oligoxyloglucan reducing end-specific cellobiohydrolase (db=superfamily db_id=SSF110296 from=138 to=351 evalue=1.2e-31)
ACD11_9_94

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90632..91189
DNA (558bp) protein (186aa)
ribosome recycling factor
coiled-coil (db=Coil db_id=coil from=157 to=185 evalue=NA)
frr: ribosome recycling factor (db=HMMTigr db_id=TIGR00496 from=10 to=185 evalue=9.5e-75 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (db=HMMPanther db_id=PTHR20982:SF3 from=1 to=185 evalue=3.5e-74 interpro_id=IPR015998 interpro_description=Ribosome recycling factor, bacterial-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: translational termination (GO:0006415))
ACD11_9_95

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91206..92339
DNA (1134bp) protein (378aa)
membrane-associated zinc metalloprotease
Membrane-associated zinc metalloprotease n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIV1_9FIRM (db=UNIREF evalue=4.0e-36 bit_score=155.0 identity=35.03 coverage=84.1269841269841)
seg (db=Seg db_id=seg from=302 to=313)
seg (db=Seg db_id=seg from=35 to=46)
ACD11_9_96

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92445..92906
DNA (462bp) protein (154aa)
greA; transcription elongation factor GreA
seg (db=Seg db_id=seg from=85 to=99)
coiled-coil (db=Coil db_id=coil from=14 to=35 evalue=NA)
GREAB_1 (db=PatternScan db_id=PS00829 from=16 to=47 evalue=0.0 interpro_id=IPR018151 interpro_description=Transcription elongation factor, GreA/GreB, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD11_9_97

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93064..94554
DNA (1491bp) protein (497aa)
lysyl-tRNA synthetase
lysyl-tRNA synthetase
UPI0001D5AC77 related cluster n=1 Tax=unknown RepID=UPI0001D5AC77 (db=UNIREF evalue=1.0e-101 bit_score=374.0 identity=40.85 coverage=95.9758551307847)
seg (db=Seg db_id=seg from=466 to=477)
ACD11_9_98

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94576..94986
DNA (411bp) protein (137aa)
FAD synthetase
seg (db=Seg db_id=seg from=111 to=124)
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=1 to=126 evalue=1.5e-23 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=1 to=136 evalue=2.1e-22)
ACD11_9_99

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comp(94940..96181)
DNA (1242bp) protein (414aa)
94940..96181 - (rbs_motif=AAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15699.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_9_100

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96371..97699
DNA (1329bp) protein (443aa)
seryl-tRNA synthetase
seryl-tRNA synthetase
Seryl-tRNA synthetase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7E0_PAESJ (db=UNIREF evalue=4.0e-94 bit_score=348.0 identity=42.12 coverage=95.7110609480813)
coiled-coil (db=Coil db_id=coil from=44 to=65 evalue=NA)
ACD11_9_101

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97825..98229
DNA (405bp) protein (135aa)
phage antirepressor protein
Uncharacterized protein {ECO:0000313|EMBL:EKE15701.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD11_C00009G00101,ACD11_4244.102628.29G0101,ACD11_4244.102628.29_101 id=3012 tax=ACD11 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
ACD11_9_102

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98309..98869
DNA (561bp) protein (187aa)
Metal dependent phosphohydrolase
HD (db=HMMPfam db_id=PF01966 from=30 to=127 evalue=1.6e-14 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=30 to=111 evalue=1.9e-09)
HDIG: uncharacterized domain HDIG (db=HMMTigr db_id=TIGR00277 from=23 to=98 evalue=0.00025 interpro_id=IPR006675 interpro_description=Uncharacterised protein family HDIG)
ACD11_9_103

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comp(98870..99913)
DNA (1044bp) protein (348aa)
twitching motility protein
T2SP_E (db=PatternScan db_id=PS00662 from=198 to=212 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
pilT_fam: twitching motility protein (db=HMMTigr db_id=TIGR01420 from=2 to=343 evalue=7.6e-98 interpro_id=IPR006321 interpro_description=Pilus retraction protein PilT GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=343 evalue=5.2e-60)
ACD11_9_104

Not on your lists

100056..101288
DNA (1233bp) protein (411aa)
beta-glucosidase
beta-glucosidase
Beta-glucosidase n=1 Tax=Pyrococcus furiosus RepID=Q9HHB3_PYRFU (db=UNIREF evalue=2.0e-81 bit_score=306.0 identity=38.75 coverage=98.5401459854015)
GLYCOSYL_HYDROL_F1_2 (db=PatternScan db_id=PS00653 from=11 to=25 evalue=0.0 interpro_id=IPR018120 interpro_description=Glycoside hydrolase, family 1, active site GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
ACD11_9_105

Not on your lists

101293..102027
DNA (735bp) protein (245aa)
hypothetical protein
Xylose isomerase-like (db=superfamily db_id=SSF51658 from=1 to=234 evalue=2.0e-11 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
AP_endonuc_2 (db=HMMPfam db_id=PF01261 from=27 to=178 evalue=2.4e-07 interpro_id=IPR012307 interpro_description=Xylose isomerase, TIM barrel domain)
hypothetical protein alias=ACD11_4244.102628.29G0105,ACD11_4244.102628.29_105,ACD11_C00009G00105 id=3047 tax=ACD11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
Displaying items 91-105 of 105 in total

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