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ACD28_73

Alias: ACD28_72956.15467.11

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_73_1
GWA2_OD1_47_10, Parcubacteria, Bacteria

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2..166
DNA (165bp) protein (55aa)
seg (db=Seg db_id=seg from=9 to=18)
hypothetical protein Tax=GWA2_OD1_47_10
ACD28_73_2
GWA2_OD1_47_10, Parcubacteria, Bacteria

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comp(254..748)
DNA (495bp) protein (165aa)
def; putative peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=bacterium S5 RepID=D3C1V1_9BACT (db=UNIREF evalue=2.0e-25 bit_score=118.0 identity=44.97 coverage=88.4848484848485)
seg (db=Seg db_id=seg from=22 to=32)
Peptide deformylase (db=superfamily db_id=SSF56420 from=2 to=161 evalue=1.6e-47 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
ACD28_73_3

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comp(781..1905)
DNA (1125bp) protein (375aa)
PrfB; protein chain release factor B
seg (db=Seg db_id=seg from=9 to=20)
coiled-coil (db=Coil db_id=coil from=276 to=304 evalue=NA)
coiled-coil (db=Coil db_id=coil from=99 to=120 evalue=NA)
ACD28_73_4

Not on your lists

comp(1937..3589)
DNA (1653bp) protein (551aa)
seg (db=Seg db_id=seg from=49 to=69)
seg (db=Seg db_id=seg from=513 to=525)
Uncharacterized protein {ECO:0000313|EMBL:EKD92650.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_73_5
GWA2_OD1_47_10, Parcubacteria, Bacteria

Not on your lists

3637..5139
DNA (1503bp) protein (501aa)
heteropolysaccharide repeat-containing protein
seg (db=Seg db_id=seg from=359 to=373)
transmembrane_regions (db=TMHMM db_id=tmhmm from=468 to=490)
transmembrane_regions (db=TMHMM db_id=tmhmm from=431 to=453)
ACD28_73_6
GWA2_OD1_47_10, Parcubacteria, Bacteria

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comp(5263..5829)
DNA (567bp) protein (189aa)
5263..5829 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=GWA2_OD1_47_10
ACD28_73_7
GWA2_OD1_47_10, Parcubacteria, Bacteria

Not on your lists

comp(5826..6077)
DNA (252bp) protein (84aa)
5826..6077 - (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=GWA2_OD1_47_10
ACD28_73_8
GWA2_OD1_47_10, Parcubacteria, Bacteria

Not on your lists

comp(6203..7525)
DNA (1323bp) protein (441aa)
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUX7_9BACE (db=UNIREF evalue=2.0e-69 bit_score=267.0 identity=35.4 coverage=99.0929705215419)
seg (db=Seg db_id=seg from=93 to=103)
FOLYLPOLYGLU_SYNT_1 (db=PatternScan db_id=PS01011 from=92 to=115 evalue=0.0 interpro_id=IPR018109 interpro_description=Folylpolyglutamate synthetase, conserved site GO=Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326), Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD28_73_9

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7624..9609
DNA (1986bp) protein (662aa)
RNA-metabolising metallo-beta-lactamase
RNA-metabolising metallo-beta-lactamase
RNA-metabolising metallo-beta-lactamase n=1 Tax=Bacillus tusciae DSM 2912 RepID=D5WPM1_9BACL (db=UNIREF evalue=2.0e-139 bit_score=499.0 identity=44.77 coverage=82.4773413897281)
seg (db=Seg db_id=seg from=599 to=617)
ACD28_73_10
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(9614..9988)
DNA (375bp) protein (125aa)
9614..9988 - (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_73_11
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

10529..11638
DNA (1110bp) protein (370aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
seg (db=Seg db_id=seg from=80 to=94)
seg (db=Seg db_id=seg from=9 to=21)
no description (db=HMMSmart db_id=SM00480 from=17 to=365 evalue=5.3e-93 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
ACD28_73_12

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11713..14919
DNA (3207bp) protein (1069aa)
Transcription-repair coupling factor n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRU9_9FIRM (db=UNIREF evalue=0.0 bit_score=681.0 identity=41.24 coverage=82.600561272217)
transcription-repair coupling factor (EC:3.6.1.-)
transcription-repair coupling factor (EC:3.6.1.-)
seg (db=Seg db_id=seg from=227 to=240)
Displaying 12 items

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