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ACD28_94_3

Organism: ACD28

near complete RP 49 / 55 MC: 12 BSCG 45 / 51 MC: 2 ASCG 0 / 38
Location: comp(884..1429)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 35.2
  • Coverage: 165.0
  • Bit_score: 99
  • Evalue 7.90e-19
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=17 to=173 evalue=3.0e-41 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.00e-41
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=109 evalue=1.8e-19 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.80e-19

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Taxonomy

GWA2_PER_44_7 → Peregrinibacteria → Bacteria

Sequences

DNA sequence
Length: 546
ATGACTGATTTCGATCTCATTCGCCTCTATCTTGAAAAGCAGGATGAAATGGTGCTCCGAACCTTATTGGAACGCTATCTTCAACTGGGATTTGCGATCATCTATCGCATTGTGGGGGACAAAGAAGAGGCGGAAGATATTCTACAGGAAGCGCTCATCAAAGTTGTTAACGGCTTAAAAACCTTCAAAATGGAGTCCAGTTTCAAAACCTGGTTCGGCAAAATCTGTTACCATGAAGGAATCAATCAGTACAAACGACGCAAGCCATTGGTCAGCCTGGAAGATGTGGCATACGAACTCCACGACTCTCATCGGGTGGACGACGAGGTCGAAACCGAAATGGAAAAAGCGGTCATCTGGTCCTGCGTGGAAGAGTTGGATCCGAAATACCGGACCGTTCTCCTCTCCTTCTATCAAAACGAACTGTCTATTAAAGAAATTGCCGAGATGATGAATACCAACGAAAATACGATTAAAACGCATCTTTCCCGGGCCAAATCACAACTCAAACAGCAACTTGCCACCCGTTCCATTTCGTCCCTCTAA
PROTEIN sequence
Length: 182
MTDFDLIRLYLEKQDEMVLRTLLERYLQLGFAIIYRIVGDKEEAEDILQEALIKVVNGLKTFKMESSFKTWFGKICYHEGINQYKRRKPLVSLEDVAYELHDSHRVDDEVETEMEKAVIWSCVEELDPKYRTVLLSFYQNELSIKEIAEMMNTNENTIKTHLSRAKSQLKQQLATRSISSL*