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ACD2_5

Alias: ACD2_97.15026.58

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_5_1
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(119..907)
DNA (789bp) protein (263aa)
tsf; elongation factor Ts
seg (db=Seg db_id=seg from=40 to=51)
EF_TS_2 (db=PatternScan db_id=PS01127 from=73 to=83 evalue=0.0 interpro_id=IPR018101 interpro_description=Translation elongation factor Ts, conserved site GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
EF_TS_1 (db=PatternScan db_id=PS01126 from=10 to=25 evalue=0.0 interpro_id=IPR018101 interpro_description=Translation elongation factor Ts, conserved site GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD2_5_2
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(984..1367)
DNA (384bp) protein (128aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=43)
transmembrane_regions 25..43 Tax=ACD2
ACD2_5_3
ACD2, Gracilibacteria, Bacteria

Not on your lists


comp(1387..2157)
DNA (771bp) protein (257aa)
rpsB; 30S ribosomal protein S2
seg (db=Seg db_id=seg from=128 to=155)
seg (db=Seg db_id=seg from=229 to=247)
coiled-coil (db=Coil db_id=coil from=134 to=155 evalue=NA)
ACD2_5_4
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(2345..3226)
DNA (882bp) protein (294aa)
2345..3226 - (rbs_motif=TATAA rbs_spacer=4bp)
hypothetical protein Tax=ACD2
ACD2_5_5
ACD2, Gracilibacteria, Bacteria

Not on your lists

3253..3447
DNA (195bp) protein (65aa)
3253..3447 + (rbs_motif=TAA rbs_spacer=5bp)
hypothetical protein Tax=ACD2
ACD2_5_6
ACD2, Gracilibacteria, Bacteria

Not on your lists

3466..4899
DNA (1434bp) protein (478aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01P01_SOLUE (db=UNIREF evalue=5.0e-115 bit_score=418.0 identity=42.77 coverage=99.581589958159)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
ACD2_5_7

Not on your lists

4909..5370
DNA (462bp) protein (154aa)
MutT/nudix family protein
Nudix (db=superfamily db_id=SSF55811 from=1 to=145 evalue=1.4e-25 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=8 to=128 evalue=8.4e-19 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=13 to=131 evalue=1.4e-13 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD2_5_8

Not on your lists

5393..5827
DNA (435bp) protein (145aa)
MutT/nudix family protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BB10_CLOBO (db=UNIREF evalue=2.0e-22 bit_score=107.0 identity=41.18 coverage=91.7241379310345)
MutT/nudix family protein
Nudix (db=superfamily db_id=SSF55811 from=1 to=138 evalue=1.2e-19 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=8 to=127 evalue=5.7e-16 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD2_5_9

Not on your lists

5847..6374
DNA (528bp) protein (176aa)
hypothetical protein
hypothetical protein SvirD4_00315 n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B50547 (db=UNIREF evalue=5.0e-23 bit_score=110.0 identity=36.93 coverage=98.2954545454545)
seg (db=Seg db_id=seg from=70 to=84)
CYTH-like phosphatases (db=superfamily db_id=SSF55154 from=3 to=160 evalue=2.0e-16 interpro_id=IPR004206 interpro_description=mRNA capping enzyme, beta subunit GO=Molecular Function: polynucleotide 5'-phosphatase activity (GO:0004651), Molecular Function: protein binding (GO:0005515), Biological Process: mRNA capping (GO:0006370), Cellular Component: mRNA cap methyltransferase complex (GO:0031533))
ACD2_5_10
ACD2, Gracilibacteria, Bacteria

Not on your lists

6377..7003
DNA (627bp) protein (209aa)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=9 to=206 evalue=1.8e-21)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=8 to=179 evalue=8.0e-09)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=48 to=134 evalue=8.7e-05 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine-dependent methyltransferases Tax=ACD2
ACD2_5_11
unknown

Not on your lists

7015..8259
DNA (1245bp) protein (415aa)
Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MZR3_9CHLO (db=UNIREF evalue=1.0e-13 bit_score=81.6 identity=36.3 coverage=31.0843373493976)
metal dependent phosphohydrolase
seg (db=Seg db_id=seg from=97 to=108)
seg (db=Seg db_id=seg from=197 to=221)
ACD2_5_12
ACD2, Gracilibacteria, Bacteria

Not on your lists

8382..9584
DNA (1203bp) protein (401aa)
seg (db=Seg db_id=seg from=185 to=194)
seg (db=Seg db_id=seg from=7 to=15)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=5.0)
seg 7..15 Tax=ACD2
ACD2_5_13
ACD2, Gracilibacteria, Bacteria

Not on your lists

9593..11440
DNA (1848bp) protein (616aa)
seg (db=Seg db_id=seg from=116 to=128)
seg (db=Seg db_id=seg from=157 to=173)
transmembrane_regions (db=TMHMM db_id=tmhmm from=307 to=329)
seg (db=Seg db_id=seg from=341 to=364)
ACD2_5_14
ACD2, Gracilibacteria, Bacteria

Not on your lists

11442..13562
DNA (2121bp) protein (707aa)
intracellular serine protease; K13275 major intracellular serine protease [EC:3.4.21.-] (db=KEGG evalue=8.0e-16 bit_score=89.7 identity=31.34 coverage=27.5813295615276)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
seg (db=Seg db_id=seg from=66 to=84)
seg (db=Seg db_id=seg from=433 to=454)
ACD2_5_15

Not on your lists

comp(13608..14123)
DNA (516bp) protein (172aa)
TetR_N (db=HMMPfam db_id=PF00440 from=6 to=50 evalue=9.7e-14 interpro_id=IPR001647 interpro_description=Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Homeodomain-like (db=superfamily db_id=SSF46689 from=1 to=69 evalue=1.5e-12 interpro_id=IPR009057 interpro_description=Homeodomain-like)
no description (db=Gene3D db_id=G3DSA:1.10.10.60 from=2 to=48 evalue=5.1e-07 interpro_id=IPR012287 interpro_description=Homeodomain-related GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription (GO:0045449))
HTHTETR (db=FPrintScan db_id=PR00455 from=5 to=18 evalue=9.7e-06 interpro_id=IPR001647 interpro_description=Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD2_5_16
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(14760..14960)
DNA (201bp) protein (67aa)
14760..14960 - (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=ACD2
Displaying 16 items

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