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ACD2_9

Alias: ACD2_2636.43471.61

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_9_1
ACD2, ACD2, ACD2, ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(3..68)
DNA (66bp) protein (22aa)
3..68 - (rbs_motif=TAA rbs_spacer=11bp)
ACD2_9_2
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(43..1083)
DNA (1041bp) protein (347aa)
S-layer domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PBH3_CLOTS (db=UNIREF evalue=2.0e-17 bit_score=94.0 identity=33.49 coverage=55.3314121037464)
S-layer protein
seg (db=Seg db_id=seg from=31 to=59)
seg (db=Seg db_id=seg from=9 to=22)
ACD2_9_3
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(1168..6222)
DNA (5055bp) protein (1685aa)
hypothetical protein
seg (db=Seg db_id=seg from=1365 to=1394)
seg (db=Seg db_id=seg from=1329 to=1340)
seg (db=Seg db_id=seg from=1300 to=1312)
ACD2_9_4
ACD2, Gracilibacteria, Bacteria

Not on your lists

6442..7116
DNA (675bp) protein (225aa)
nudix hydrolase
seg (db=Seg db_id=seg from=102 to=117)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=161 to=224 evalue=5.7e-12)
Nudix (db=superfamily db_id=SSF55811 from=9 to=162 evalue=3.6e-06 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
degrades 8-oxoguanine- containing deoxyribonucleoside triphosphate, a potentially mutagenic substrate for DNA synthesis, to the corresponding monophosphate, thereby preventing misincorporation of 8-oxo-dGTP into DNA Jill Banfield (11/15/12)
ACD2_9_5
ACD2, Gracilibacteria, Bacteria

Not on your lists

7192..8805
DNA (1614bp) protein (538aa)
glycoside hydrolase family protein (db=KEGG evalue=2.0e-07 bit_score=60.8 identity=30.37 coverage=20.4460966542751)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=50 to=352 evalue=1.4e-12 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
no description (db=Gene3D db_id=G3DSA:3.20.20.80 from=106 to=344 evalue=2.0e-07 interpro_id=IPR013781 interpro_description=Glycoside hydrolase, subgroup, catalytic core GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: cation binding (GO:0043169))
putative plant degradation kelly wrighton (11/15/12)
family 26 Jill Banfield (11/15/12)
Family 26 inc. b-mannanase and b 1,3-xylanase Jill Banfield (11/15/12)
putative plant related degradation, family 26 kelly wrighton (11/15/12)
ACD2_9_6
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(9310..10629)
DNA (1320bp) protein (440aa)
DNA repair protein radA n=2 Tax=Desulfitobacterium hafniense RepID=B8G1T4_DESHD (db=UNIREF evalue=7.0e-85 bit_score=318.0 identity=41.02 coverage=92.7272727272727)
DNA repair protein RadA
DNA repair protein RadA
DNA repair protein RadA
ACD2_9_7
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(10640..10843)
DNA (204bp) protein (68aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=59)
transmembrane_regions 21..38 Tax=ACD2
ACD2_9_8
ACD2, Gracilibacteria, Bacteria

Not on your lists

11001..11300
DNA (300bp) protein (100aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
SecE (db=HMMPfam db_id=PF00584 from=2 to=50 evalue=7.5e-12 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=1 to=57 evalue=4.9e-09 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
transmembrane_regions 26..48 Tax=ACD2
ACD2_9_9
ACD2, Gracilibacteria, Bacteria

Not on your lists

11325..11876
DNA (552bp) protein (184aa)
transcription termination/antitermination factor NusG
no description (db=Gene3D db_id=G3DSA:3.30.70.940 from=9 to=122 evalue=9.5e-27 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
N-utilization substance G protein NusG, N-terminal domain (db=superfamily db_id=SSF82679 from=9 to=122 evalue=1.3e-25 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
no description (db=HMMSmart db_id=SM00738 from=9 to=118 evalue=9.6e-22 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD2_9_10
ACD2, Gracilibacteria, Bacteria

Not on your lists

11896..12618
DNA (723bp) protein (241aa)
seg (db=Seg db_id=seg from=92 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
coiled-coil (db=Coil db_id=coil from=59 to=80 evalue=NA)
coiled-coil 59..80 Tax=ACD2
ACD2_9_11
ACD2, Gracilibacteria, Bacteria

Not on your lists

12657..13145
DNA (489bp) protein (163aa)
transcription elongation factor GreA
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
coiled-coil (db=Coil db_id=coil from=50 to=71 evalue=NA)
GreA transcript cleavage protein, N-terminal domain (db=superfamily db_id=SSF46557 from=4 to=81 evalue=9.4e-19 interpro_id=IPR022691 interpro_description=Transcription elongation factor, GreA/GreB, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD2_9_12
unknown

Not on your lists

13155..13568
DNA (414bp) protein (138aa)
Acid phosphatase/vanadium-dependent haloperoxidase related protein n=1 Tax=Ethanoligenens harbinense YUAN-3 RepID=D3NNZ2_9FIRM (db=UNIREF evalue=4.0e-16 bit_score=87.0 identity=31.94 coverage=96.3768115942029)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
ACD2_9_13
ACD2, Gracilibacteria, Bacteria

Not on your lists

13761..15053
DNA (1293bp) protein (431aa)
13761..15053 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD2
ACD2_9_14
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(15099..16892)
DNA (1794bp) protein (598aa)
diguanylate cyclase/phosphodiesterase (db=KEGG evalue=6.0e-08 bit_score=63.2 identity=20.54 coverage=34.7826086956522)
transmembrane_regions (db=TMHMM db_id=tmhmm from=173 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=160)
ACD2_9_15

Not on your lists

comp(16961..18058)
DNA (1098bp) protein (366aa)
amidohydrolase 2
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=41 to=343 evalue=2.4e-17)
Amidohydro_2 (db=HMMPfam db_id=PF04909 from=173 to=342 evalue=8.5e-15 interpro_id=IPR006992 interpro_description=Amidohydrolase 2 GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
amidohydrolase 2 alias=ACD2_C00009G00015,ACD2_2636.43471.61G0015,ACD2_2636.43471.61_15 id=34239 tax=ACD2 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown organism_group=BD1-5 organism_desc=BD1-5
ACD2_9_16
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(18060..18851)
DNA (792bp) protein (264aa)
18060..18851 - (rbs_motif=TAAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
ACD2_9_17
ACD2, Gracilibacteria, Bacteria

Not on your lists


18977..21622
DNA (2646bp) protein (882aa)
valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthetase (EC:6.1.1.9)
Valyl-tRNA synthetase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CY39_HALOH (db=UNIREF evalue=0.0 bit_score=681.0 identity=40.99 coverage=99.4331065759637)
ACD2_9_18
ACD2, Gracilibacteria, Bacteria

Not on your lists

21639..22334
DNA (696bp) protein (232aa)
21639..22334 + (rbs_motif=TAAAA rbs_spacer=14bp)
hypothetical protein Tax=ACD2
ACD2_9_19
ACD2, Gracilibacteria, Bacteria

Not on your lists

23239..24243
DNA (1005bp) protein (335aa)
integrase:recombinase
seg (db=Seg db_id=seg from=202 to=212)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=139 to=334 evalue=9.0e-45 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=144 to=330 evalue=1.2e-40 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD2_9_20
ACD2, Gracilibacteria, Bacteria

Not on your lists

24310..24729
DNA (420bp) protein (140aa)
24310..24729 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD2
ACD2_9_21
ACD2, Gracilibacteria, Bacteria

Not on your lists

24785..26431
DNA (1647bp) protein (549aa)
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=174 to=434 evalue=2.4e-43)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=157 to=364 evalue=1.9e-39)
POR_N (db=HMMPfam db_id=PF01855 from=194 to=418 evalue=2.5e-31 interpro_id=IPR002880 interpro_description=Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD2_9_22

Not on your lists

26416..27018
DNA (603bp) protein (201aa)
hypothetical protein
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=7 to=195 evalue=9.1e-52)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=10 to=199 evalue=2.1e-47)
TPP_enzyme_C (db=HMMPfam db_id=PF02775 from=43 to=188 evalue=2.6e-27 interpro_id=IPR011766 interpro_description=Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: thiamin pyrophosphate binding (GO:0030976))
ACD2_9_23

Not on your lists

27595..28530
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A7UZ53_BACUN (db=UNIREF evalue=1.0e-124 bit_score=449.0 identity=69.03 coverage=98.7179487179487)
Nucleoside-diphosphate-sugar epimerases (EC:4.2.1.46)
Nucleoside-diphosphate-sugar epimerases (EC:4.2.1.46)
Nucleoside-diphosphate-sugar epimerases (EC:4.2.1.46)
ACD2_9_24

Not on your lists

28653..29750
DNA (1098bp) protein (366aa)
GDP-D-mannose dehydratase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBS8_9SPHI (db=UNIREF evalue=2.0e-138 bit_score=495.0 identity=62.57 coverage=99.4535519125683)
hypothetical protein
hypothetical protein
hypothetical protein
ACD2_9_25
ACD2, Gracilibacteria, Bacteria

Not on your lists

29725..30708
DNA (984bp) protein (328aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4C2_DESRM (db=UNIREF evalue=5.0e-117 bit_score=424.0 identity=62.03 coverage=93.5975609756098)
GDP-L-fucose synthetase (EC:1.1.1.271)
GDP-L-fucose synthetase (EC:1.1.1.271)
GDP-L-fucose synthetase (EC:1.1.1.271)
ACD2_9_26
ACD2, Gracilibacteria, Bacteria

Not on your lists

30708..32051
DNA (1344bp) protein (448aa)
membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=367 to=389)
transmembrane_regions (db=TMHMM db_id=tmhmm from=393 to=415)
transmembrane_regions (db=TMHMM db_id=tmhmm from=422 to=441)
ACD2_9_27
ACD2, Gracilibacteria, Bacteria

Not on your lists

32072..32167
DNA (96bp) protein (32aa)
32072..32167 + (rbs_motif=TAAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
ACD2_9_28
ACD2, Gracilibacteria, Bacteria

Not on your lists

32167..33144
DNA (978bp) protein (326aa)
GDP-mannose 4,6-dehydratase
seg (db=Seg db_id=seg from=97 to=110)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=6 to=323 evalue=1.6e-97)
GDP MANNOSE-4,6-DEHYDRATASE (db=HMMPanther db_id=PTHR10366:SF32 from=6 to=323 evalue=1.6e-97 interpro_id=IPR006368 interpro_description=GDP-mannose 4,6-dehydratase GO=Cellular Component: intracellular (GO:0005622), Molecular Function: GDP-mannose 4,6-dehydratase activity (GO:0008446), Biological Process: GDP-mannose metabolic process (GO:0019673))
ACD2_9_29
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(33162..34289)
DNA (1128bp) protein (376aa)
glycosyltransferase family 32 protein (db=KEGG evalue=3.0e-15 bit_score=86.7 identity=29.84 coverage=60.3723404255319)
glycosyltransferase family 32 protein alias=ACD2_C00009G00029,ACD2_2636.43471.61G0029,ACD2_2636.43471.61_29 id=34248 tax=ACD2 species=Laccaria bicolor genus=Laccaria taxon_order=Agaricales taxon_class=Agaricomycetes phylum=Basidiomycota organism_group=BD1-5 organism_desc=BD1-5
glycosyltransferase family 32 protein Tax=ACD2
ACD2_9_30
unknown

Not on your lists

comp(34328..35335)
DNA (1008bp) protein (336aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VH98_9CYAN (db=UNIREF evalue=4.0e-23 bit_score=112.0 identity=28.84 coverage=87.7976190476191)
Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VH98_9CYAN Tax=ACD2
Displaying items 1-30 of 39 in total

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