Alias: ACD2_2636.43471.61
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_9_1
ACD2, ACD2, ACD2, ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(3..68)
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3..68 - (rbs_motif=TAA rbs_spacer=11bp)
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ACD2_9_2
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(43..1083)
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S-layer domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PBH3_CLOTS (db=UNIREF evalue=2.0e-17 bit_score=94.0 identity=33.49 coverage=55.3314121037464)
S-layer protein
seg (db=Seg db_id=seg from=31 to=59)
seg (db=Seg db_id=seg from=9 to=22)
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ACD2_9_3
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(1168..6222)
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hypothetical protein
seg (db=Seg db_id=seg from=1365 to=1394)
seg (db=Seg db_id=seg from=1329 to=1340)
seg (db=Seg db_id=seg from=1300 to=1312)
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ACD2_9_4
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
6442..7116
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nudix hydrolase
seg (db=Seg db_id=seg from=102 to=117)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=161 to=224 evalue=5.7e-12)
Nudix (db=superfamily db_id=SSF55811 from=9 to=162 evalue=3.6e-06 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
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degrades 8-oxoguanine- containing deoxyribonucleoside triphosphate, a potentially mutagenic substrate for DNA synthesis, to the corresponding monophosphate, thereby preventing misincorporation of 8-oxo-dGTP into DNA
Jill Banfield
(11/15/12)
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ACD2_9_5
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
7192..8805
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glycoside hydrolase family protein (db=KEGG evalue=2.0e-07 bit_score=60.8 identity=30.37 coverage=20.4460966542751)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=50 to=352 evalue=1.4e-12 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
no description (db=Gene3D db_id=G3DSA:3.20.20.80 from=106 to=344 evalue=2.0e-07 interpro_id=IPR013781 interpro_description=Glycoside hydrolase, subgroup, catalytic core GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: cation binding (GO:0043169))
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putative plant degradation
kelly wrighton
(11/15/12)
family 26
Jill Banfield
(11/15/12)
Family 26 inc. b-mannanase and b 1,3-xylanase
Jill Banfield
(11/15/12)
putative plant related degradation, family 26
kelly wrighton
(11/15/12)
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ACD2_9_6
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(9310..10629)
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DNA repair protein radA n=2 Tax=Desulfitobacterium hafniense RepID=B8G1T4_DESHD (db=UNIREF evalue=7.0e-85 bit_score=318.0 identity=41.02 coverage=92.7272727272727)
DNA repair protein RadA
DNA repair protein RadA
DNA repair protein RadA
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ACD2_9_7
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(10640..10843)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=59)
transmembrane_regions 21..38 Tax=ACD2
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ACD2_9_8
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
11001..11300
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transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
SecE (db=HMMPfam db_id=PF00584 from=2 to=50 evalue=7.5e-12 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=1 to=57 evalue=4.9e-09 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
transmembrane_regions 26..48 Tax=ACD2
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ACD2_9_9
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
11325..11876
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transcription termination/antitermination factor NusG
no description (db=Gene3D db_id=G3DSA:3.30.70.940 from=9 to=122 evalue=9.5e-27 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
N-utilization substance G protein NusG, N-terminal domain (db=superfamily db_id=SSF82679 from=9 to=122 evalue=1.3e-25 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
no description (db=HMMSmart db_id=SM00738 from=9 to=118 evalue=9.6e-22 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
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ACD2_9_10
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
11896..12618
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seg (db=Seg db_id=seg from=92 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
coiled-coil (db=Coil db_id=coil from=59 to=80 evalue=NA)
coiled-coil 59..80 Tax=ACD2
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ACD2_9_11
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
12657..13145
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transcription elongation factor GreA
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
coiled-coil (db=Coil db_id=coil from=50 to=71 evalue=NA)
GreA transcript cleavage protein, N-terminal domain (db=superfamily db_id=SSF46557 from=4 to=81 evalue=9.4e-19 interpro_id=IPR022691 interpro_description=Transcription elongation factor, GreA/GreB, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD2_9_12
unknown
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Not on your lists |
13155..13568
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Acid phosphatase/vanadium-dependent haloperoxidase related protein n=1 Tax=Ethanoligenens harbinense YUAN-3 RepID=D3NNZ2_9FIRM (db=UNIREF evalue=4.0e-16 bit_score=87.0 identity=31.94 coverage=96.3768115942029)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
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ACD2_9_13
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
13761..15053
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13761..15053 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD2
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ACD2_9_14
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(15099..16892)
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diguanylate cyclase/phosphodiesterase (db=KEGG evalue=6.0e-08 bit_score=63.2 identity=20.54 coverage=34.7826086956522)
transmembrane_regions (db=TMHMM db_id=tmhmm from=173 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=160)
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ACD2_9_15
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(16961..18058)
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amidohydrolase 2
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=41 to=343 evalue=2.4e-17)
Amidohydro_2 (db=HMMPfam db_id=PF04909 from=173 to=342 evalue=8.5e-15 interpro_id=IPR006992 interpro_description=Amidohydrolase 2 GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
amidohydrolase 2 alias=ACD2_C00009G00015,ACD2_2636.43471.61G0015,ACD2_2636.43471.61_15 id=34239 tax=ACD2 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown organism_group=BD1-5 organism_desc=BD1-5
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ACD2_9_16
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(18060..18851)
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18060..18851 - (rbs_motif=TAAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
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ACD2_9_17
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
18977..21622
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valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthetase (EC:6.1.1.9)
Valyl-tRNA synthetase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CY39_HALOH (db=UNIREF evalue=0.0 bit_score=681.0 identity=40.99 coverage=99.4331065759637)
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ACD2_9_18
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
21639..22334
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21639..22334 + (rbs_motif=TAAAA rbs_spacer=14bp)
hypothetical protein Tax=ACD2
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ACD2_9_19
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
23239..24243
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integrase:recombinase
seg (db=Seg db_id=seg from=202 to=212)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=139 to=334 evalue=9.0e-45 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=144 to=330 evalue=1.2e-40 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
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ACD2_9_20
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
24310..24729
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24310..24729 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD2
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ACD2_9_21
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
24785..26431
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Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=174 to=434 evalue=2.4e-43)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=157 to=364 evalue=1.9e-39)
POR_N (db=HMMPfam db_id=PF01855 from=194 to=418 evalue=2.5e-31 interpro_id=IPR002880 interpro_description=Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
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ACD2_9_22
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
26416..27018
|
hypothetical protein
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=7 to=195 evalue=9.1e-52)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=10 to=199 evalue=2.1e-47)
TPP_enzyme_C (db=HMMPfam db_id=PF02775 from=43 to=188 evalue=2.6e-27 interpro_id=IPR011766 interpro_description=Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: thiamin pyrophosphate binding (GO:0030976))
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ACD2_9_23
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
27595..28530
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Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A7UZ53_BACUN (db=UNIREF evalue=1.0e-124 bit_score=449.0 identity=69.03 coverage=98.7179487179487)
Nucleoside-diphosphate-sugar epimerases (EC:4.2.1.46)
Nucleoside-diphosphate-sugar epimerases (EC:4.2.1.46)
Nucleoside-diphosphate-sugar epimerases (EC:4.2.1.46)
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ACD2_9_24
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
28653..29750
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GDP-D-mannose dehydratase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBS8_9SPHI (db=UNIREF evalue=2.0e-138 bit_score=495.0 identity=62.57 coverage=99.4535519125683)
hypothetical protein
hypothetical protein
hypothetical protein
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ACD2_9_25
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
29725..30708
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NAD-dependent epimerase/dehydratase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4C2_DESRM (db=UNIREF evalue=5.0e-117 bit_score=424.0 identity=62.03 coverage=93.5975609756098)
GDP-L-fucose synthetase (EC:1.1.1.271)
GDP-L-fucose synthetase (EC:1.1.1.271)
GDP-L-fucose synthetase (EC:1.1.1.271)
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ACD2_9_26
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
30708..32051
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membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=367 to=389)
transmembrane_regions (db=TMHMM db_id=tmhmm from=393 to=415)
transmembrane_regions (db=TMHMM db_id=tmhmm from=422 to=441)
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ACD2_9_27
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
32072..32167
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32072..32167 + (rbs_motif=TAAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
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ACD2_9_28
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
32167..33144
|
GDP-mannose 4,6-dehydratase
seg (db=Seg db_id=seg from=97 to=110)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=6 to=323 evalue=1.6e-97)
GDP MANNOSE-4,6-DEHYDRATASE (db=HMMPanther db_id=PTHR10366:SF32 from=6 to=323 evalue=1.6e-97 interpro_id=IPR006368 interpro_description=GDP-mannose 4,6-dehydratase GO=Cellular Component: intracellular (GO:0005622), Molecular Function: GDP-mannose 4,6-dehydratase activity (GO:0008446), Biological Process: GDP-mannose metabolic process (GO:0019673))
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ACD2_9_29
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(33162..34289)
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glycosyltransferase family 32 protein (db=KEGG evalue=3.0e-15 bit_score=86.7 identity=29.84 coverage=60.3723404255319)
glycosyltransferase family 32 protein alias=ACD2_C00009G00029,ACD2_2636.43471.61G0029,ACD2_2636.43471.61_29 id=34248 tax=ACD2 species=Laccaria bicolor genus=Laccaria taxon_order=Agaricales taxon_class=Agaricomycetes phylum=Basidiomycota organism_group=BD1-5 organism_desc=BD1-5
glycosyltransferase family 32 protein Tax=ACD2
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ACD2_9_30
unknown
|
Not on your lists |
comp(34328..35335)
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hypothetical protein
Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VH98_9CYAN (db=UNIREF evalue=4.0e-23 bit_score=112.0 identity=28.84 coverage=87.7976190476191)
Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VH98_9CYAN Tax=ACD2
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