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ACD2_10

Alias: ACD2_1.21692.61

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_10_1
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(117..1247)
DNA (1131bp) protein (377aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=25 to=38)
Pili subunits (db=superfamily db_id=SSF54523 from=23 to=145 evalue=2.4e-14)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=20 to=43 evalue=5.5e-07 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD2_10_2
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(1324..2067)
DNA (744bp) protein (248aa)
1324..2067 - (rbs_motif=TAAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
ACD2_10_3

Not on your lists

comp(2074..2340)
DNA (267bp) protein (89aa)
coiled-coil (db=Coil db_id=coil from=4 to=25 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
seg (db=Seg db_id=seg from=43 to=50)
ACD2_10_4
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(2362..3345)
DNA (984bp) protein (328aa)
hypothetical protein (db=KEGG evalue=3.0e-21 bit_score=106.0 identity=26.55 coverage=85.6707317073171)
Protein kinase-like (PK-like) (db=superfamily db_id=SSF56112 from=16 to=290 evalue=1.1e-14 interpro_id=IPR011009 interpro_description=Protein kinase-like domain)
APH (db=HMMPfam db_id=PF01636 from=76 to=271 evalue=1.8e-06 interpro_id=IPR002575 interpro_description=Aminoglycoside phosphotransferase)
hypothetical protein alias=ACD2_C00010G00004,ACD2_1.21692.61G0004,ACD2_1.21692.61_4 id=34274 tax=ACD2 species=Agrobacterium tumefaciens genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD2_10_5
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(3384..3971)
DNA (588bp) protein (196aa)
seg (db=Seg db_id=seg from=161 to=174)
seg (db=Seg db_id=seg from=9 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=183)
transmembrane_regions 161..183 Tax=ACD2
ACD2_10_6

Not on your lists

comp(4016..6406)
DNA (2391bp) protein (797aa)
hypothetical protein
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J980_9ARCH (db=UNIREF evalue=4.0e-98 bit_score=363.0 identity=45.37 coverage=52.0702634880803)
ACD2_10_7
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(6494..7498)
DNA (1005bp) protein (335aa)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=71 to=160 evalue=1.3e-07 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
CNMP_BINDING_3 (db=ProfileScan db_id=PS50042 from=73 to=158 evalue=8.042 interpro_id=IPR000595 interpro_description=Cyclic nucleotide-binding)
cAMP-binding domain-like Tax=ACD2
ACD2_10_8
unknown

Not on your lists

comp(7501..8559)
DNA (1059bp) protein (353aa)
Twitching motility protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ23_9FIRM (db=UNIREF evalue=7.0e-79 bit_score=297.0 identity=43.93 coverage=96.8838526912181)
Tfp pilus assembly protein, pilus retraction ATPase PilT
pilT_fam: twitching motility protein (db=HMMTigr db_id=TIGR01420 from=5 to=349 evalue=3.8e-118 interpro_id=IPR006321 interpro_description=Pilus retraction protein PilT GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=104 to=352 evalue=4.3e-57)
ACD2_10_9
ACD2, Gracilibacteria, Bacteria

Not on your lists

8657..9190
DNA (534bp) protein (178aa)
coiled-coil (db=Coil db_id=coil from=81 to=124 evalue=NA)
seg (db=Seg db_id=seg from=99 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
Apolipoprotein (db=superfamily db_id=SSF47162 from=42 to=176 evalue=1.2e-06)
ACD2_10_10
unknown

Not on your lists

9309..9866
DNA (558bp) protein (186aa)
heat shock protein GrpE
Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BB07_9FIRM (db=UNIREF evalue=5.0e-21 bit_score=103.0 identity=37.5 coverage=70.9677419354839)
seg (db=Seg db_id=seg from=24 to=30)
seg (db=Seg db_id=seg from=5 to=17)
ACD2_10_11
ACD2, Gracilibacteria, Bacteria

Not on your lists

9938..10183
DNA (246bp) protein (82aa)
hypothetical protein; K08998 hypothetical protein (db=KEGG evalue=6.0e-11 bit_score=69.7 identity=52.31 coverage=69.5121951219512)
seg (db=Seg db_id=seg from=2 to=15)
DUF37 (db=HMMPfam db_id=PF01809 from=8 to=80 evalue=1.5e-17 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
Y17A_AQUAE_O66562; (db=BlastProDom db_id=PD004225 from=37 to=79 evalue=2.0e-09 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
ACD2_10_12
ACD2, Gracilibacteria, Bacteria

Not on your lists

10194..10550
DNA (357bp) protein (119aa)
seg (db=Seg db_id=seg from=17 to=22)
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=2 to=111 evalue=1.3e-08 interpro_id=IPR009002 interpro_description=FMN-binding split barrel, related)
seg 17..22 Tax=ACD2
ACD2_10_13

Not on your lists

10561..11046
DNA (486bp) protein (162aa)
CMP/dCMP deaminase zinc-binding n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z8B4_9BACT (db=UNIREF evalue=3.0e-09 bit_score=64.3 identity=33.08 coverage=78.3950617283951)
Cytidine deaminase-like (db=superfamily db_id=SSF53927 from=13 to=137 evalue=2.1e-11 interpro_id=IPR016193 interpro_description=Cytidine deaminase-like GO=Molecular Function: catalytic activity (GO:0003824))
dCMP_cyt_deam_1 (db=HMMPfam db_id=PF00383 from=14 to=139 evalue=7.1e-10 interpro_id=IPR002125 interpro_description=CMP/dCMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.40.140.10 from=15 to=142 evalue=6.6e-07)
ACD2_10_14
unknown

Not on your lists

11114..11701
DNA (588bp) protein (196aa)
Holliday junction ATP-dependent DNA helicase ruvA n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2I8_9PROT (db=UNIREF evalue=2.0e-19 bit_score=99.0 identity=33.69 coverage=90.8163265306122)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA (db=KEGG evalue=2.0e-19 bit_score=98.6 identity=33.0 coverage=96.9387755102041)
RuvA domain 2-like (db=superfamily db_id=SSF47781 from=66 to=142 evalue=2.7e-12 interpro_id=IPR010994 interpro_description=RuvA domain 2-like)
no description (db=Gene3D db_id=G3DSA:1.10.150.20 from=69 to=156 evalue=1.1e-11)
ACD2_10_15
unknown

Not on your lists

11704..12219
DNA (516bp) protein (172aa)
Uracil-DNA glycosylase-like protein n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5R5W4_9FIRM (db=UNIREF evalue=1.0e-12 bit_score=75.9 identity=38.98 coverage=65.1162790697674)
seg (db=Seg db_id=seg from=160 to=171)
UDG (db=HMMPfam db_id=PF03167 from=63 to=163 evalue=9.1e-07 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
Uracil-DNA glycosylase-like protein n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5R5W4_9FIRM Tax=ACD2
ACD2_10_16
unknown

Not on your lists

12219..13343
DNA (1125bp) protein (375aa)
polysaccharide pyruvyl transferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0044 (db=UNIREF evalue=7.0e-11 bit_score=72.0 identity=23.51 coverage=83.7333333333333)
polysaccharide pyruvyl transferase family protein (db=KEGG evalue=1.0e-10 bit_score=70.9 identity=25.32 coverage=76.0)
seg (db=Seg db_id=seg from=339 to=352)
PS_pyruv_trans (db=HMMPfam db_id=PF04230 from=16 to=303 evalue=7.4e-26 interpro_id=IPR007345 interpro_description=Polysaccharide pyruvyl transferase)
ACD2_10_17
ACD2, Gracilibacteria, Bacteria

Not on your lists

13318..13977
DNA (660bp) protein (220aa)
coiled-coil (db=Coil db_id=coil from=32 to=92 evalue=NA)
seg (db=Seg db_id=seg from=33 to=48)
seg (db=Seg db_id=seg from=50 to=70)
LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (db=HMMPanther db_id=PTHR23241 from=3 to=130 evalue=1.6e-05)
ACD2_10_18
ACD2, Gracilibacteria, Bacteria

Not on your lists

13994..14203
DNA (210bp) protein (70aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions 4..26 Tax=ACD2
ACD2_10_19

Not on your lists

14271..14930
DNA (660bp) protein (220aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G8V3_9FIRM (db=UNIREF evalue=9.0e-29 bit_score=130.0 identity=33.02 coverage=83.6363636363636)
DUF45 (db=HMMPfam db_id=PF01863 from=13 to=212 evalue=3.5e-55 interpro_id=IPR002725 interpro_description=Protein of unknown function DUF45)
Uncharacterized protein {ECO:0000313|EMBL:EKE30369.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD2_10_20

Not on your lists

comp(14917..16047)
DNA (1131bp) protein (377aa)
glycosyl transferase family 1
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=8 to=376 evalue=4.1e-82)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=8 to=376 evalue=4.1e-82)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=22 to=373 evalue=4.2e-37)
ACD2_10_21
ACD2, Gracilibacteria, Bacteria

Not on your lists

16172..17818
DNA (1647bp) protein (549aa)
coiled-coil (db=Coil db_id=coil from=44 to=69 evalue=NA)
coiled-coil (db=Coil db_id=coil from=75 to=103 evalue=NA)
seg (db=Seg db_id=seg from=201 to=213)
seg (db=Seg db_id=seg from=311 to=327)
ACD2_10_22
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(17783..18529)
DNA (747bp) protein (249aa)
hemolysin A
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=56 to=243 evalue=2.5e-18)
FtsJ (db=HMMPfam db_id=PF01728 from=57 to=211 evalue=9.0e-14 interpro_id=IPR002877 interpro_description=Ribosomal RNA methyltransferase RrmJ/FtsJ GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=1 to=57 evalue=4.8e-11)
ACD2_10_23

Not on your lists

comp(18531..19379)
DNA (849bp) protein (283aa)
seg (db=Seg db_id=seg from=238 to=250)
seg (db=Seg db_id=seg from=179 to=192)
seg (db=Seg db_id=seg from=101 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=265 to=280)
ACD2_10_24
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(19381..19917)
DNA (537bp) protein (179aa)
coiled-coil (db=Coil db_id=coil from=9 to=30 evalue=NA)
seg (db=Seg db_id=seg from=9 to=30)
coiled-coil 9..30 Tax=ACD2
ACD2_10_25
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(19925..20791)
DNA (867bp) protein (289aa)
UTP-glucose-1-phosphate uridylyltransferase
GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF14 from=14 to=286 evalue=1.1e-87)
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE (db=HMMPanther db_id=PTHR22572 from=14 to=286 evalue=1.1e-87)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=268 evalue=2.0e-51)
ACD2_10_26
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(20900..21754)
DNA (855bp) protein (285aa)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=48 to=281 evalue=2.6e-16 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
Concanavalin A-like lectins/glucanases Tax=ACD2
Displaying 26 items

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