ggKbase home page

ACD2_12

Alias: ACD2_537.6719.56

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_12_1
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(232..759)
DNA (528bp) protein (176aa)
232..759 - (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
ACD2_12_2
unknown

Not on your lists

949..2007
DNA (1059bp) protein (353aa)
hypothetical protein
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5A7_SPHTD (db=UNIREF evalue=1.0e-37 bit_score=160.0 identity=34.69 coverage=88.6685552407932)
transmembrane_regions (db=TMHMM db_id=tmhmm from=329 to=351)
seg (db=Seg db_id=seg from=182 to=190)
ACD2_12_3
ACD2, Gracilibacteria, Bacteria

Not on your lists

2294..2932
DNA (639bp) protein (213aa)
lexA; LexA repressor (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] (db=KEGG evalue=9.0e-13 bit_score=76.6 identity=32.55 coverage=86.3849765258216)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=69 evalue=6.2e-12)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=67 evalue=1.4e-08 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
LexA_DNA_bind (db=HMMPfam db_id=PF01726 from=2 to=56 evalue=2.6e-08 interpro_id=IPR006199 interpro_description=LexA, DNA-binding domain GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ACD2_12_4
ACD2, Gracilibacteria, Bacteria

Not on your lists

2945..3448
DNA (504bp) protein (168aa)
2945..3448 + (rbs_motif=TAAAAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
ACD2_12_5
ACD2, Gracilibacteria, Bacteria

Not on your lists

3457..3843
DNA (387bp) protein (129aa)
repressor
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=1 to=126 evalue=7.6e-16 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=14 to=125 evalue=4.5e-13 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
LexA repressor; K01356 repressor LexA [EC:3.4.21.88] alias=ACD2_537.6719.56G0005,ACD2_537.6719.56_5,ACD2_C00012G00005 id=34312 tax=ACD2 species=Methylovorus glucosotrophus genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD2_12_6
unknown

Not on your lists

3971..4441
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T7U7_YERIN (db=UNIREF evalue=4.0e-10 bit_score=67.0 identity=32.24 coverage=95.5414012738854)
hypothetical protein (db=KEGG evalue=5.0e-09 bit_score=63.2 identity=32.19 coverage=90.4458598726115)
seg (db=Seg db_id=seg from=131 to=142)
Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T7U7_YERIN Tax=ACD2
ACD2_12_7
unknown

Not on your lists

4465..4887
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXN1_9BACT (db=UNIREF evalue=1.0e-21 bit_score=105.0 identity=35.56 coverage=94.3262411347518)
putative Diaminopimelate decarboxylase (EC:4.1.1.20)
Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXN1_9BACT Tax=ACD2
ACD2_12_8
unknown

Not on your lists

4913..6082
DNA (1170bp) protein (390aa)
Putative RumB/ImpB like DNA repair protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWQ8_9PROT (db=UNIREF evalue=3.0e-41 bit_score=172.0 identity=31.27 coverage=96.6666666666667)
nucleotidyltransferase/DNA polymerase involved in DNA repair
DNA/RNA polymerases (db=superfamily db_id=SSF56672 from=8 to=238 evalue=3.7e-51)
DNA POLYMERASE IV / KAPPA (db=HMMPanther db_id=PTHR11076:SF12 from=12 to=359 evalue=3.1e-49)
ACD2_12_9
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(6083..6781)
DNA (699bp) protein (233aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=204 to=226)
Fibrinogen C-terminal domain-like (db=superfamily db_id=SSF56496 from=35 to=89 evalue=3.0e-08 interpro_id=IPR002181 interpro_description=Fibrinogen, alpha/beta/gamma chain, C-terminal globular GO=Molecular Function: receptor binding (GO:0005102), Biological Process: signal transduction (GO:0007165))
Fibrinogen_C (db=HMMPfam db_id=PF00147 from=62 to=92 evalue=3.3e-05 interpro_id=IPR002181 interpro_description=Fibrinogen, alpha/beta/gamma chain, C-terminal globular GO=Molecular Function: receptor binding (GO:0005102), Biological Process: signal transduction (GO:0007165))
transmembrane_regions 204..226 Tax=ACD2
Displaying 9 items

View Taxonomy