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ACD2_24

Alias: ACD2_2507.52297.57

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Displaying items 31-44 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_24_31
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(38133..39584)
DNA (1452bp) protein (484aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
seg (db=Seg db_id=seg from=19 to=32)
transmembrane_regions 74..96 Tax=ACD2
ACD2_24_32
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(39599..40156)
DNA (558bp) protein (186aa)
RNA polymerase, sigma-24 subunit, ECF subfamily protein
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=16 to=174 evalue=5.0e-26 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=10 to=86 evalue=6.6e-17 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=5 to=90 evalue=8.5e-15)
ACD2_24_33
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(40168..40797)
DNA (630bp) protein (210aa)
40168..40797 - (rbs_motif=TAAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
hypothetical protein
ACD2_24_34
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(40892..41668)
DNA (777bp) protein (259aa)
esterase/lipase/thioesterase family protein; K06889 (db=KEGG evalue=2.0e-17 bit_score=92.8 identity=28.69 coverage=87.2586872586873)
seg (db=Seg db_id=seg from=244 to=255)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=1 to=257 evalue=9.5e-29)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=28 to=254 evalue=1.5e-12)
ACD2_24_35
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(41790..42575)
DNA (786bp) protein (262aa)
41790..42575 - (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD2
ACD2_24_36
ACD2, Gracilibacteria, Bacteria

Not on your lists

44307..44900
DNA (594bp) protein (198aa)
44307..44900 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD2
ACD2_24_37
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(44925..45491)
DNA (567bp) protein (189aa)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=188 evalue=1.8e-10)
P-loop containing nucleoside triphosphate hydrolases Tax=ACD2
ACD2_24_38

Not on your lists

45686..46744
DNA (1059bp) protein (353aa)
msfA; vHiSLR1, Sel1-like repeat protein
seg (db=Seg db_id=seg from=5 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=121 to=352 evalue=3.2e-62 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
ACD2_24_39
ACD2, Gracilibacteria, Bacteria

Not on your lists

47021..47215
DNA (195bp) protein (65aa)
47021..47215 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD2
ACD2_24_40

Not on your lists


47580..49385
DNA (1806bp) protein (602aa)
alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanyl-tRNA synthetase n=1 Tax=Treponema denticola RepID=SYA_TREDE (db=UNIREF evalue=3.0e-153 bit_score=545.0 identity=48.52 coverage=98.8372093023256)
ACD2_24_41
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(49481..49924)
DNA (444bp) protein (148aa)
hypothetical protein
Bet v1-like (db=superfamily db_id=SSF55961 from=1 to=146 evalue=2.7e-16)
AHSA1 (db=HMMPfam db_id=PF08327 from=12 to=143 evalue=1.5e-10 interpro_id=IPR013538 interpro_description=Activator of Hsp90 ATPase homologue 1-like GO=Biological Process: response to stress (GO:0006950))
hypothetical protein alias=ACD2_C00024G00041,ACD2_2507.52297.57G0041,ACD2_2507.52297.57_41 id=34891 tax=ACD2 species=Algoriphagus sp. PR1 genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=BD1-5 organism_desc=BD1-5
ACD2_24_42
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(50083..50751)
DNA (669bp) protein (223aa)
hypothetical protein
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=24 to=220 evalue=2.8e-30)
RibD_C (db=HMMPfam db_id=PF01872 from=26 to=207 evalue=1.7e-25 interpro_id=IPR002734 interpro_description=Bacterial bifunctional deaminase-reductase, C-terminal GO=Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703), Biological Process: riboflavin biosynthetic process (GO:0009231))
no description (db=Gene3D db_id=G3DSA:3.40.430.10 from=26 to=219 evalue=3.9e-18)
ACD2_24_43
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(50911..51174)
DNA (264bp) protein (88aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
transmembrane_regions 24..46 Tax=ACD2
ACD2_24_44
ACD2, Gracilibacteria, Bacteria

Not on your lists

51666..52244
DNA (579bp) protein (193aa)
ribosomal small subunit pseudouridine synthase A (EC:4.2.1.70)
seg (db=Seg db_id=seg from=157 to=168)
TIGR00093: pseudouridine synthase (db=HMMTigr db_id=TIGR00093 from=14 to=180 evalue=2.7e-38 interpro_id=IPR000748 interpro_description=Pseudouridine synthase, RsuA/RluB/E/F GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866))
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600 from=3 to=192 evalue=2.5e-30)
Displaying items 31-44 of 44 in total

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