Alias: ACD2_29.34396.60
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_27_1
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(281..1039)
|
seg (db=Seg db_id=seg from=82 to=91)
seg 82..91 Tax=ACD2
|
|
ACD2_27_2
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
1248..4379
|
seg (db=Seg db_id=seg from=596 to=616)
seg (db=Seg db_id=seg from=885 to=898)
seg (db=Seg db_id=seg from=904 to=918)
seg (db=Seg db_id=seg from=411 to=433)
|
|
ACD2_27_3
unknown
|
Not on your lists |
comp(4577..9973)
|
Cna protein B-type domain n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VZU0_9CYAN (db=UNIREF evalue=5.0e-52 bit_score=211.0 identity=39.05 coverage=19.2884936075598)
Subtilisin (EC:3.4.21.62)
seg (db=Seg db_id=seg from=886 to=897)
seg (db=Seg db_id=seg from=116 to=127)
|
|
ACD2_27_4
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
10152..12554
|
Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C5R1_9FIRM (db=UNIREF evalue=0.0 bit_score=808.0 identity=50.62 coverage=99.5006242197253)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
|
|
ACD2_27_5
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
12620..13627
|
copper amine oxidase-like domain-containing protein
seg (db=Seg db_id=seg from=5 to=14)
copper amine oxidase domain-containing protein alias=ACD2_29.34396.60G0005,ACD2_29.34396.60_5,ACD2_C00027G00005 id=34950 tax=ACD2 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
copper amine oxidase domain-containing protein Tax=ACD2
|
amine:oxygen oxidoreductase (deaminating) (copper-containing) participates in urea cycle and metabolism of amino groups, glycine, serine and threonine metabolism, histidine metabolism, tyrosine metabolism, phenylalanine metabolism, tryptophan metabolism, beta-alanine metabolism, and alkaloid biosynthesis ii.
Jill Banfield
(11/15/12)
|
ACD2_27_6
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
13680..14792
|
trpS; tryptophan--tRNA ligase (EC:6.1.1.2)
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=36 to=45 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=26 to=345 evalue=1.3e-62)
TRYPTOPHANYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR10055 from=34 to=360 evalue=2.4e-55 interpro_id=IPR002306 interpro_description=Tryptophanyl-tRNA synthetase, class Ib GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436))
|
|
ACD2_27_7
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
14917..15639
|
seg (db=Seg db_id=seg from=2 to=16)
seg 2..16 Tax=ACD2
|
|
ACD2_27_8
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
15646..16368
|
15646..16368 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD2
|
|
ACD2_27_9
unknown
|
Not on your lists |
comp(16370..17206)
|
hypothetical protein VspiD_06995 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745ADD (db=UNIREF evalue=1.0e-09 bit_score=67.8 identity=27.23 coverage=65.2329749103943)
hypothetical protein VspiD_06995 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745ADD Tax=ACD2
|
|
ACD2_27_10
unknown
|
Not on your lists |
comp(17216..18931)
|
Lipid A export ATP-binding/permease protein MsbA
Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C820_9FIRM (db=UNIREF evalue=1.0e-51 bit_score=207.0 identity=36.92 coverage=55.2447552447552)
transmembrane_regions (db=TMHMM db_id=tmhmm from=52 to=74)
transmembrane_regions (db=TMHMM db_id=tmhmm from=127 to=149)
|
|
ACD2_27_11
unknown
|
Not on your lists |
comp(18978..20714)
|
Lipid A export ATP-binding/permease protein MsbA
MDR-like ABC transporter n=3 Tax=Oryza sativa RepID=Q8GU71_ORYSJ (db=UNIREF evalue=4.0e-53 bit_score=213.0 identity=41.3 coverage=41.7962003454231)
seg (db=Seg db_id=seg from=253 to=264)
transmembrane_regions (db=TMHMM db_id=tmhmm from=275 to=297)
|
|
ACD2_27_12
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(20728..22887)
|
prlC; oligopeptidase A (EC:3.4.24.70)
Metalloproteases ("zincins"), catalytic domain (db=superfamily db_id=SSF55486 from=58 to=719 evalue=1.3e-95)
Peptidase_M3 (db=HMMPfam db_id=PF01432 from=275 to=718 evalue=2.1e-74 interpro_id=IPR001567 interpro_description=Peptidase M3A/M3B, thimet/oligopeptidase F GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
no description (db=Gene3D db_id=G3DSA:1.10.1370.10 from=192 to=719 evalue=4.7e-62)
|
|
ACD2_27_13
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(23009..23407)
|
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=3 to=126 evalue=1.9e-13 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acetyltransf_1 (db=HMMPfam db_id=PF00583 from=49 to=124 evalue=6.6e-05 interpro_id=IPR022610 interpro_description=GCN5-related N-acetyltransferase, C-terminal)
GNAT (db=ProfileScan db_id=PS51186 from=3 to=132 evalue=12.043 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase GO=Molecular Function: N-acetyltransferase activity (GO:0008080), Biological Process: metabolic process (GO:0008152))
Acyl-CoA N-acyltransferases (Nat) Tax=ACD2
|
|
ACD2_27_14
unknown
|
Not on your lists |
comp(23419..24030)
|
Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AKL9_9PORP (db=UNIREF evalue=2.0e-17 bit_score=92.4 identity=36.31 coverage=75.4901960784314)
alpha-ribazole phosphatase; K01834 phosphoglycerate mutase [EC:5.4.2.1] (db=KEGG evalue=1.0e-15 bit_score=85.9 identity=32.84 coverage=90.1960784313726)
PG_MUTASE (db=PatternScan db_id=PS00175 from=22 to=31 evalue=0.0 interpro_id=IPR001345 interpro_description=Phosphoglycerate/bisphosphoglycerate mutase, active site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Phosphoglycerate mutase-like (db=superfamily db_id=SSF53254 from=17 to=203 evalue=8.2e-39)
|
|
ACD2_27_15
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
24169..25581
|
DNA polymerase I n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694FEA (db=UNIREF evalue=2.0e-100 bit_score=369.0 identity=46.7 coverage=86.1995753715499)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I (EC:2.7.7.7)
|
|
ACD2_27_16
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
25581..26369
|
seg (db=Seg db_id=seg from=115 to=126)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=20 to=221 evalue=7.8e-11)
UNCHARACTERIZED (db=HMMPanther db_id=PTHR11845 from=27 to=232 evalue=3.4e-09)
no description (db=Gene3D db_id=G3DSA:1.10.3210.10 from=22 to=189 evalue=3.3e-06)
|
|
ACD2_27_17
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
26430..26819
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
seg (db=Seg db_id=seg from=34 to=50)
transmembrane_regions 27..49 Tax=ACD2
|
|
ACD2_27_18
unknown
|
Not on your lists |
comp(26863..28083)
|
putative HtrA2 peptidase (EC:3.4.21.108)
protease Do n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174268D (db=UNIREF evalue=9.0e-35 bit_score=151.0 identity=37.9 coverage=57.2481572481572)
seg (db=Seg db_id=seg from=79 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
|
|
ACD2_27_19
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
28261..28626
|
seg (db=Seg db_id=seg from=3 to=17)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=60 to=120 evalue=2.8e-06 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
seg 3..17 Tax=ACD2
|
|
ACD2_27_20
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(28724..29533)
|
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.60.21.30 from=2 to=268 evalue=4.4e-44)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=2 to=266 evalue=7.9e-44)
metallophosphoesterase; K09769 hypothetical protein alias=ACD2_29.34396.60G0020,ACD2_29.34396.60_20,ACD2_C00027G00020 id=34954 tax=ACD2 species=Caldicellulosiruptor saccharolyticus genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
|
|
ACD2_27_21
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(29555..29851)
|
CutA1 divalent ion tolerance protein
CutA1 (db=HMMPfam db_id=PF03091 from=3 to=98 evalue=6.1e-21 interpro_id=IPR004323 interpro_description=Divalent ion tolerance protein, CutA1 GO=Biological Process: response to metal ion (GO:0010038))
GlnB-like (db=superfamily db_id=SSF54913 from=2 to=98 evalue=6.5e-21 interpro_id=IPR011322 interpro_description=Nitrogen regulatory PII-like, alpha/beta)
no description (db=Gene3D db_id=G3DSA:3.30.70.830 from=2 to=98 evalue=5.4e-19 interpro_id=IPR004323 interpro_description=Divalent ion tolerance protein, CutA1 GO=Biological Process: response to metal ion (GO:0010038))
|
|
ACD2_27_22
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(29869..30345)
|
seg (db=Seg db_id=seg from=130 to=141)
seg 130..141 Tax=ACD2
|
|
ACD2_27_23
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(30359..31039)
|
30359..31039 - (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD2
|
|
ACD2_27_24
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(31051..32607)
|
hypothetical protein
hypothetical protein
hypothetical protein
Methionyl-tRNA synthetase alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTD0_9AQUI (db=UNIREF evalue=1.0e-93 bit_score=347.0 identity=37.96 coverage=90.5587668593449)
|
|
ACD2_27_25
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(32738..33109)
|
Anti-sigma factor antagonist SpoIIaa (db=superfamily db_id=SSF52091 from=8 to=117 evalue=2.3e-09 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
no description (db=Gene3D db_id=G3DSA:3.30.750.24 from=6 to=113 evalue=1.1e-06 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
STAS (db=HMMPfam db_id=PF01740 from=20 to=113 evalue=3.0e-05 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
STAS (db=ProfileScan db_id=PS50801 from=9 to=117 evalue=9.027 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
|
|
ACD2_27_26
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(33274..34233)
|
seg (db=Seg db_id=seg from=225 to=237)
seg (db=Seg db_id=seg from=197 to=222)
transmembrane_regions (db=TMHMM db_id=tmhmm from=296 to=315)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
|