Alias: ACD2_2941.41259.59
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_30_1
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(46..285)
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seg (db=Seg db_id=seg from=28 to=37)
seg 28..37 Tax=ACD2
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ACD2_30_2
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
322..570
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lp_hng_hel_AbrB: transcriptional regu (db=HMMTigr db_id=TIGR01439 from=23 to=66 evalue=6.8e-08 interpro_id=IPR006339 interpro_description=Transcription regulator AbrB)
AbrB/MazE/MraZ-like (db=superfamily db_id=SSF89447 from=17 to=68 evalue=5.0e-07)
SpoVT_AbrB (db=HMMPfam db_id=PF04014 from=24 to=55 evalue=0.00025 interpro_id=IPR007159 interpro_description=Transcription regulator AbrB/SpoV, predicted)
Q3Z6M2_DEHE1_Q3Z6M2; (db=BlastProDom db_id=PD058861 from=22 to=82 evalue=0.001 interpro_id=IPR020154 interpro_description=Transcription regulator AbrB, subgroup)
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ACD2_30_3
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
607..2553
|
secretion protein HlyD
coiled-coil (db=Coil db_id=coil from=176 to=197 evalue=NA)
coiled-coil (db=Coil db_id=coil from=144 to=165 evalue=NA)
seg (db=Seg db_id=seg from=175 to=192)
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ACD2_30_4
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
2581..2946
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seg (db=Seg db_id=seg from=72 to=82)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=97 evalue=3.5e-08 interpro_id=IPR011006 interpro_description=CheY-like)
seg 72..82 Tax=ACD2
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ACD2_30_5
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
2950..6138
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nolG; nodulation protein NolG
nolG; nodulation protein NolG
nolG; nodulation protein NolG
Heavy metal efflux pump n=1 Tax=uncultured bacterium RepID=Q2Z053_9BACT (db=UNIREF evalue=3.0e-86 bit_score=324.0 identity=27.38 coverage=92.0037629350894)
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ACD2_30_6
unknown
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Not on your lists |
6125..7300
|
hypothetical protein
Multidrug transporter, putative n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0S1_9BACT (db=UNIREF evalue=3.0e-14 bit_score=83.2 identity=25.64 coverage=88.265306122449)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=240 to=262)
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ACD2_30_7
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(7464..8843)
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seg (db=Seg db_id=seg from=241 to=247)
seg (db=Seg db_id=seg from=212 to=232)
seg (db=Seg db_id=seg from=15 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
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ACD2_30_8
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(8911..11406)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=733 to=741)
seg (db=Seg db_id=seg from=12 to=33)
seg (db=Seg db_id=seg from=474 to=483)
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ACD2_30_9
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
11989..14274
|
DNA topoisomerase I
DNA topoisomerase I
DNA topoisomerase I
DNA topoisomerase n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PTV0_9BACT (db=UNIREF evalue=8.0e-144 bit_score=514.0 identity=46.18 coverage=87.2703412073491)
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ACD2_30_10
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
14281..14475
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14281..14475 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=ACD2
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ACD2_30_11
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
14486..14635
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14486..14635 + (rbs_motif=TAAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
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ACD2_30_12
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
14644..15561
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DNA polymerase III
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
DNA_processg_A (db=HMMPfam db_id=PF02481 from=16 to=222 evalue=7.5e-51 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=24 to=218 evalue=1.1e-15)
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ACD2_30_13
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
15570..16598
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UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR21015 from=1 to=295 evalue=1.1e-49)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=2 to=298 evalue=2.9e-39)
no description (db=Gene3D db_id=G3DSA:3.40.50.2000 from=2 to=172 evalue=6.2e-22)
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ACD2_30_14
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
16638..16823
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16638..16823 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
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ACD2_30_15
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
17002..17181
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single-strand binding protein; K03111 single-strand DNA-binding protein (db=KEGG evalue=3.0e-08 bit_score=60.5 identity=46.43 coverage=91.6666666666667)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=4 to=56 evalue=3.6e-13 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=4 to=57 evalue=2.1e-12 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=4 to=57 evalue=4.8e-09 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
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ACD2_30_16
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
17285..19921
|
seg (db=Seg db_id=seg from=737 to=752)
seg (db=Seg db_id=seg from=695 to=708)
seg (db=Seg db_id=seg from=492 to=503)
seg (db=Seg db_id=seg from=25 to=39)
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ACD2_30_17
unknown
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Not on your lists |
comp(19926..23321)
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ATP-dependent RNA helicase HrpA
ATP-dependent helicase HrpA n=1 Tax=Neisseria sicca ATCC 29256 RepID=C6M596_NEISI (db=UNIREF evalue=5.0e-41 bit_score=174.0 identity=27.67 coverage=53.0035335689046)
seg (db=Seg db_id=seg from=185 to=197)
seg (db=Seg db_id=seg from=641 to=651)
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ACD2_30_18
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(23389..26427)
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ATP-dependent helicase HrpA
seg (db=Seg db_id=seg from=199 to=211)
seg (db=Seg db_id=seg from=423 to=439)
seg (db=Seg db_id=seg from=997 to=1011)
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ACD2_30_19
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
26681..26953
|
seg (db=Seg db_id=seg from=75 to=90)
coiled-coil (db=Coil db_id=coil from=25 to=46 evalue=NA)
Ribosomal_S20p (db=HMMPfam db_id=PF01649 from=2 to=84 evalue=3.7e-18 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S20 (db=superfamily db_id=SSF46992 from=3 to=86 evalue=1.8e-16 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_30_20
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
26957..27469
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translation initiation factor IF-3
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=8 to=170 evalue=8.4e-26 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=23 to=170 evalue=1.6e-21 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
IF3_N (db=HMMPfam db_id=PF05198 from=3 to=78 evalue=1.8e-17 interpro_id=IPR019814 interpro_description=Translation initiation factor 3, N-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
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ACD2_30_21
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
27501..27698
|
RIBOSOMAL_L35 (db=PatternScan db_id=PS00936 from=4 to=30 evalue=0.0 interpro_id=IPR018265 interpro_description=Ribosomal protein L35, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L35p-like (db=superfamily db_id=SSF143034 from=1 to=64 evalue=2.6e-14)
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=53 evalue=1.1e-11 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=1 to=63 evalue=1.0e-09 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_30_22
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
27781..28101
|
50S ribosomal protein L20
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=2 to=101 evalue=6.6e-33 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=106 evalue=2.8e-26 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L20 (db=HMMPanther db_id=PTHR10986 from=1 to=106 evalue=1.0e-24 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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ACD2_30_23
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(28262..29221)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=273)
seg (db=Seg db_id=seg from=21 to=51)
seg (db=Seg db_id=seg from=111 to=126)
seg (db=Seg db_id=seg from=266 to=275)
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ACD2_30_24
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
29351..33124
|
seg (db=Seg db_id=seg from=1125 to=1134)
seg (db=Seg db_id=seg from=837 to=849)
seg (db=Seg db_id=seg from=668 to=681)
seg (db=Seg db_id=seg from=135 to=146)
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ACD2_30_25
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(34163..34318)
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34163..34318 - (rbs_motif=TAAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
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ACD2_30_26
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(35252..36826)
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peptidoglycan-binding peptidase M23B (db=KEGG evalue=3.0e-11 bit_score=73.6 identity=35.85 coverage=18.2857142857143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=297 to=314)
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ACD2_30_27
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(36967..38700)
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seg (db=Seg db_id=seg from=144 to=162)
seg (db=Seg db_id=seg from=14 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=552 to=571)
Uncharacterized protein {ECO:0000313|EMBL:EKE29251.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD2_30_28
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(38809..39885)
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DNA replication and repair protein RecF
RECF_2 (db=PatternScan db_id=PS00618 from=309 to=327 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=356 evalue=5.3e-25)
recf: DNA replication and repair protein Rec (db=HMMTigr db_id=TIGR00611 from=1 to=356 evalue=8.5e-17 interpro_id=IPR001238 interpro_description=DNA-binding, RecF GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
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ACD2_30_29
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(39885..40181)
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Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=2 to=96 evalue=4.5e-15)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=3 to=98 evalue=1.4e-10 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Glu-tRNAGln (db=HMMPfam db_id=PF02686 from=20 to=84 evalue=1.3e-09 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Glu-tRNAGln amidotransferase C subunit Tax=ACD2
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ACD2_30_30
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
40226..40585
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
seg (db=Seg db_id=seg from=74 to=89)
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