ggKbase home page

ACD30_21

Alias: ACD30_62372.60379.9

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD30_21_1
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(1..2106)
DNA (2106bp) protein (702aa)
coiled-coil (db=Coil db_id=coil from=111 to=132 evalue=NA)
seg (db=Seg db_id=seg from=2 to=16)
seg (db=Seg db_id=seg from=193 to=226)
seg (db=Seg db_id=seg from=491 to=520)
ACD30_21_2
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(2113..2502)
DNA (390bp) protein (130aa)
2113..2502 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10497.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_3
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

2597..3280
DNA (684bp) protein (228aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=223)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=186)
transmembrane_regions (db=TMHMM db_id=tmhmm from=130 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
ACD30_21_4
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(3460..3738)
DNA (279bp) protein (93aa)
coiled-coil (db=Coil db_id=coil from=19 to=40 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10495.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_5
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

4014..5168
DNA (1155bp) protein (385aa)
succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
seg (db=Seg db_id=seg from=74 to=95)
SUCCINYL-COA SYNTHETASE BETA CHAIN (db=HMMPanther db_id=PTHR11815 from=1 to=347 evalue=2.3e-45 interpro_id=IPR005809 interpro_description=Succinyl-CoA synthetase, beta subunit GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=1 to=206 evalue=6.8e-38)
ACD30_21_6
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

5250..6155
DNA (906bp) protein (302aa)
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
seg (db=Seg db_id=seg from=31 to=45)
SUCCINYL_COA_LIG_1 (db=PatternScan db_id=PS01216 from=157 to=186 evalue=0.0 interpro_id=IPR005810 interpro_description=Succinyl-CoA ligase, alpha subunit GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Succinyl-CoA synthetase, alpha subunit (db=HMMPIR db_id=PIRSF001553 from=1 to=298 evalue=2.2e-95 interpro_id=IPR005810 interpro_description=Succinyl-CoA ligase, alpha subunit GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD30_21_7
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

6208..6879
DNA (672bp) protein (224aa)
Citryl-CoA lyase (Fragment) n=1 Tax=Hydrogenobacter hydrogenophilus RepID=A1Y9I4_9AQUI (db=UNIREF evalue=7.0e-36 bit_score=153.0 identity=40.51 coverage=86.6071428571429)
citrate synthase
Citrate synthase (db=superfamily db_id=SSF48256 from=16 to=218 evalue=5.5e-41 interpro_id=IPR016141 interpro_description=Citrate synthase-like, core GO=Biological Process: cellular carbohydrate metabolic process (GO:0044262), Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912))
Citrate_synt (db=HMMPfam db_id=PF00285 from=23 to=221 evalue=6.1e-36 interpro_id=IPR002020 interpro_description=Citrate synthase-like GO=Biological Process: cellular carbohydrate metabolic process (GO:0044262), Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912))
ACD30_21_8
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

7072..7350
DNA (279bp) protein (93aa)
7072..7350 + (rbs_motif=TAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10491.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_9
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

7688..8359
DNA (672bp) protein (224aa)
7688..8359 + (rbs_motif=TAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10490.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_10
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

8356..9135
DNA (780bp) protein (260aa)
succinylglutamate desuccinylase
seg (db=Seg db_id=seg from=60 to=74)
AstE_AspA (db=HMMPfam db_id=PF04952 from=29 to=152 evalue=2.6e-16 interpro_id=IPR007036 interpro_description=Succinylglutamate desuccinylase/aspartoacylase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=10 to=234 evalue=2.8e-15)
ACD30_21_11
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

9096..9344
DNA (249bp) protein (83aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10488.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_12
GWA1_OP11_36_8, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

9405..10403
DNA (999bp) protein (333aa)
Tryptophanyl-tRNA synthetase n=2 Tax=Roseiflexus RepID=A5UT99_ROSS1 (db=UNIREF evalue=6.0e-98 bit_score=360.0 identity=56.59 coverage=98.7987987987988)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=11 to=21 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
ACD30_21_13
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

10438..10947
DNA (510bp) protein (170aa)
10438..10947 + (rbs_motif=TAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10486.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_14
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

10916..11251
DNA (336bp) protein (112aa)
Methionine-tRNA ligase
seg (db=Seg db_id=seg from=77 to=88)
metG_C_term: methionyl-tRNA synthetase, b (db=HMMTigr db_id=TIGR00399 from=2 to=111 evalue=8.6e-36 interpro_id=IPR004495 interpro_description=Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: methionine-tRNA ligase activity (GO:0004825), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: methionyl-tRNA aminoacylation
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=6 to=111 evalue=1.7e-33 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD30_21_15
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

11289..11891
DNA (603bp) protein (201aa)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=115 to=194 evalue=5.6e-09 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=115 to=194 evalue=2.3e-08 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=130 to=183 evalue=7.2e-06 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
RNA polymerase sigma factor {ECO:0000313|EMBL:KKQ10484.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_16
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

12749..13903
DNA (1155bp) protein (385aa)
hypothetical protein
hypothetical protein
ATP-dependent metalloprotease FtsH n=1 Tax=Ammonifex degensii KC4 RepID=C9RA08_AMMDK (db=UNIREF evalue=9.0e-118 bit_score=427.0 identity=56.17 coverage=97.4025974025974)
AAA (db=PatternScan db_id=PS00674 from=70 to=88 evalue=0.0 interpro_id=IPR003960 interpro_description=ATPase, AAA-type, conserved site GO=Molecular Function: ATP binding (GO:0005524))
ACD30_21_17
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(14261..14557)
DNA (297bp) protein (99aa)
Monogalactosyldiacylglycerol synthase
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR21015 from=2 to=72 evalue=1.1e-11)
GLYCOSYLTRANSFERASE 1 FAMILY (db=HMMPanther db_id=PTHR21015:SF21 from=2 to=72 evalue=1.1e-11)
Glyco_tran_28_C (db=HMMPfam db_id=PF04101 from=2 to=34 evalue=3.0e-07 interpro_id=IPR007235 interpro_description=Glycosyl transferase, family 28, C-terminal GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758), Molecular Function: carbohydrate binding (GO:0030246), Biological Process: lipid glycosylation (GO:0030259))
ACD30_21_18
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

15442..16185
DNA (744bp) protein (248aa)
glycosyl transferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=231 evalue=2.5e-36)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=6 to=206 evalue=3.2e-26)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=8 to=137 evalue=3.6e-21 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD30_21_19
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

16198..16776
DNA (579bp) protein (193aa)
16198..16776 + (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10480.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_20
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

18110..19216
DNA (1107bp) protein (369aa)
DNA polymerase I n=3 Tax=Dehalococcoides RepID=A5FPU6_DEHSB (db=UNIREF evalue=4.0e-84 bit_score=315.0 identity=45.6 coverage=88.8888888888889)
polA; DNA polymerase I (EC:2.7.7.7)
polA; DNA polymerase I (EC:2.7.7.7)
DNA_POLYMERASE_A (db=PatternScan db_id=PS00447 from=171 to=190 evalue=0.0 interpro_id=IPR019760 interpro_description=DNA-directed DNA polymerase, family A, conserved site)
ACD30_21_21
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(19213..20136)
DNA (924bp) protein (308aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=252 to=274)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=142)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
ACD30_21_22
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

20245..20673
DNA (429bp) protein (143aa)
seg (db=Seg db_id=seg from=87 to=118)
seg (db=Seg db_id=seg from=131 to=140)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10477.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_23
GWA1_OP11_36_8, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

20645..21457
DNA (813bp) protein (271aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=79 to=100 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:KKQ16208.1}; TaxID=1618417 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA1_36_8.;"
hypothetical protein alias=ACD30_C00021G00023,ACD30_62372.60379.9G0023,ACD30_62372.60379.9_23 id=36215 tax=ACD30 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi organism_group=OP11 organism_desc=OP11
ACD30_21_24
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

21494..22501
DNA (1008bp) protein (336aa)
seg (db=Seg db_id=seg from=12 to=29)
seg (db=Seg db_id=seg from=54 to=74)
seg (db=Seg db_id=seg from=88 to=98)
seg (db=Seg db_id=seg from=173 to=184)
ACD30_21_25
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

22529..23728
DNA (1200bp) protein (400aa)
glycosyl transferase group 1
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=5 to=397 evalue=3.3e-94)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=5 to=397 evalue=3.3e-94)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=4 to=398 evalue=9.8e-56)
ACD30_21_26
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

23738..24058
DNA (321bp) protein (107aa)
23738..24058 + (rbs_motif=TAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10473.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_27
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(24161..24373)
DNA (213bp) protein (71aa)
seg (db=Seg db_id=seg from=60 to=70)
Uncharacterized protein {ECO:0000313|EMBL:KKQ10472.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_21_28

Not on your lists

24442..25503
DNA (1062bp) protein (354aa)
recF; DNA replication and repair RecF family protein
DNA replication and repair protein recF n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQG4_9CLOT (db=UNIREF evalue=6.0e-61 bit_score=238.0 identity=37.5 coverage=97.7401129943503)
RECF_2 (db=PatternScan db_id=PS00618 from=292 to=310 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
recf: DNA replication and repair protein Rec (db=HMMTigr db_id=TIGR00611 from=1 to=347 evalue=5.4e-60 interpro_id=IPR001238 interpro_description=DNA-binding, RecF GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
ACD30_21_29
GWA1_OP11_36_8, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(25451..25735)
DNA (285bp) protein (95aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=41)
seg (db=Seg db_id=seg from=65 to=80)
seg (db=Seg db_id=seg from=18 to=27)
ACD30_21_30
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

25803..26498
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXL6_9PROT (db=UNIREF evalue=1.0e-09 bit_score=67.0 identity=29.45 coverage=65.5172413793103)
phosphoesterase PA-phosphatase related protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=227)
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=198)
Displaying items 1-30 of 65 in total

View Taxonomy