ggKbase home page

ACD30_26

Alias: ACD30_86962.11329.9

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD30_26_1
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

1..111
DNA (111bp) protein (37aa)
GrpE (db=HMMPfam db_id=PF01025 from=3 to=32 evalue=4.2e-09 interpro_id=IPR000740 interpro_description=GrpE nucleotide exchange factor GO=Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774), Cellular Component: mitochondrion (GO:0005739), Biological Process: protein folding (GO:0006457), Biological Process: protein import into mitochondrial matrix (GO:0030150), Molecular Function: protein homodimerization activity (GO:0042803), Molecular Function: chaperone binding (GO:0051087))
GRPE PROTEIN (db=HMMPanther db_id=PTHR21237 from=6 to=36 evalue=6.7e-08 interpro_id=IPR000740 interpro_description=GrpE nucleotide exchange factor GO=Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774), Cellular Component: mitochondrion (GO:0005739), Biological Process: protein folding (GO:0006457), Biological Process: protein import into mitochondrial matrix (GO:0030150), Molecular Function: protein homodimerization activity (GO:0042803), Molecular Function: chaperone binding (GO:00
GRPE PROTEIN (HSP-70 COFACTOR) (db=HMMPanther db_id=PTHR21237:SF3 from=6 to=36 evalue=6.7e-08)
Head domain of nucleotide exchange factor GrpE (db=superfamily db_id=SSF51064 from=1 to=36 evalue=4.5e-06 interpro_id=IPR009012 interpro_description=GrpE nucleotide exchange factor, head GO=Molecular Function: protein binding (GO:0005515), Biological Process: protein folding (GO:0006457))
ACD30_26_2
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

164..346
DNA (183bp) protein (61aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=44)
transmembrane_regions 27..44 Tax=RIFCSPHIGHO2_12_FULL_OP11_Daviesbacteria_37_16_curated
ACD30_26_3

Not on your lists

comp(1527..2192)
DNA (666bp) protein (222aa)
hypothetical protein
seg (db=Seg db_id=seg from=176 to=197)
seg (db=Seg db_id=seg from=34 to=69)
seg (db=Seg db_id=seg from=10 to=24)
ACD30_26_4
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

3588..4106
DNA (519bp) protein (173aa)
hypothetical protein
seg (db=Seg db_id=seg from=27 to=38)
seg (db=Seg db_id=seg from=138 to=152)
no description (db=Gene3D db_id=G3DSA:3.30.1480.10 from=10 to=129 evalue=1.7e-24 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))
ACD30_26_5
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

4103..4873
DNA (771bp) protein (257aa)
nusA; putative transcription elongation protein NusA
seg (db=Seg db_id=seg from=203 to=241)
seg (db=Seg db_id=seg from=164 to=187)
TRANSCRIPTION TERMINATION FACTOR NUSA (db=HMMPanther db_id=PTHR22648 from=1 to=252 evalue=1.9e-64)
ACD30_26_6
GWA1_OP11_36_8, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

5666..6433
DNA (768bp) protein (256aa)
translation initiation factor IF-2
seg (db=Seg db_id=seg from=139 to=151)
seg (db=Seg db_id=seg from=213 to=228)
seg (db=Seg db_id=seg from=17 to=30)
ACD30_26_7
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

6727..7815
DNA (1089bp) protein (363aa)
seg (db=Seg db_id=seg from=266 to=280)
seg (db=Seg db_id=seg from=316 to=327)
seg (db=Seg db_id=seg from=88 to=100)
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=17 to=245 evalue=1.5e-07)
ACD30_26_8
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(8351..8803)
DNA (453bp) protein (151aa)
coiled-coil (db=Coil db_id=coil from=10 to=31 evalue=NA)
seg (db=Seg db_id=seg from=15 to=31)
Uncharacterized protein {ECO:0000313|EMBL:KKQ08593.1}; TaxID=1618426 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_36_5.;"
ACD30_26_9
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

8902..9480
DNA (579bp) protein (193aa)
thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] (db=KEGG evalue=3.0e-09 bit_score=64.7 identity=29.08 coverage=93.2642487046632)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=183 evalue=4.0e-20)
Thymidylate_kin (db=HMMPfam db_id=PF02223 from=9 to=167 evalue=1.0e-10 interpro_id=IPR000062 interpro_description=Thymidylate kinase-like GO=Molecular Function: ATP binding (GO:0005524))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=6 to=190 evalue=1.8e-09)
ACD30_26_10
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

9467..10024
DNA (558bp) protein (186aa)
seg (db=Seg db_id=seg from=25 to=35)
coiled-coil (db=Coil db_id=coil from=10 to=31 evalue=NA)
CYTH-like phosphatases (db=superfamily db_id=SSF55154 from=13 to=175 evalue=4.9e-21 interpro_id=IPR004206 interpro_description=mRNA capping enzyme, beta subunit GO=Molecular Function: polynucleotide 5'-phosphatase activity (GO:0004651), Molecular Function: protein binding (GO:0005515), Biological Process: mRNA capping (GO:0006370), Cellular Component: mRNA cap methyltransferase complex (GO:0031533))
no description (db=Gene3D db_id=G3DSA:2.40.320.10 from=14 to=183 evalue=1.4e-16)
ACD30_26_11
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

10005..10997
DNA (993bp) protein (331aa)
molybdenum cofactor biosynthesis protein A
hypothetical protein SvirD4_00310 n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B50546 (db=UNIREF evalue=2.0e-25 bit_score=120.0 identity=28.48 coverage=92.4471299093656)
seg (db=Seg db_id=seg from=232 to=250)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=7 to=214 evalue=6.2e-23)
ACD30_26_12
GWB1_OP11_36_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists


11234..11365
DNA (132bp) protein (44aa)
rpsO; 30S ribosomal protein S15
RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR (db=HMMPanther db_id=PTHR23321 from=4 to=44 evalue=1.3e-14)
30S RIBOSOMAL PROTEIN S15 (db=HMMPanther db_id=PTHR23321:SF10 from=4 to=44 evalue=1.3e-14 interpro_id=IPR005290 interpro_description=Ribosomal protein S15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S15/NS1 RNA-binding domain (db=superfamily db_id=SSF47060 from=3 to=44 evalue=3.6e-09 interpro_id=IPR009068 interpro_description=S15/NS1, RNA-binding)
Displaying 12 items

View Taxonomy