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ACD36_18

Alias: ACD36_126773.3400.6

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD36_18_1

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2..547
DNA (546bp) protein (182aa)
response regulator receiver
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=122 to=149 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
GerE (db=HMMPfam db_id=PF00196 from=107 to=159 evalue=5.3e-18 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00421 from=105 to=162 evalue=5.9e-16 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD36_18_2
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

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comp(550..1620)
DNA (1071bp) protein (357aa)
DNA replication and repair protein RecF
DNA replication and repair protein recF n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC4_9BACT (db=UNIREF evalue=7.0e-58 bit_score=228.0 identity=34.53 coverage=95.5182072829132)
RECF_1 (db=PatternScan db_id=PS00617 from=130 to=150 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
RECF_2 (db=PatternScan db_id=PS00618 from=305 to=323 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
ACD36_18_3
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

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comp(1722..2612)
DNA (891bp) protein (297aa)
Nei; formamidopyrimidine-DNA glycosylase
seg (db=Seg db_id=seg from=266 to=276)
ZF_FPG_1 (db=PatternScan db_id=PS01242 from=269 to=295 evalue=0.0 interpro_id=IPR015887 interpro_description=DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799))
fpg: formamidopyrimidine-DNA glycosylase (db=HMMTigr db_id=TIGR00577 from=27 to=295 evalue=4.6e-62 interpro_id=IPR000191 interpro_description=DNA glycosylase/AP lyase GO=Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidized purine base lesion DNA N-glycosylase activity (GO:0008534))
ACD36_18_4
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

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comp(2755..3219)
DNA (465bp) protein (155aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=106)
seg (db=Seg db_id=seg from=53 to=63)
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
ACD36_18_5

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comp(3265..3432)
DNA (168bp) protein (56aa)
3265..3432 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD87549.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 5 items

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