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ACD12_1

Alias: ACD12_52007.14463.14

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_1_1

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comp(3..314)
DNA (312bp) protein (104aa)
single-stranded-DNA-specific exonuclease RecJ
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=3 to=92 evalue=6.7e-17)
DHH (db=HMMPfam db_id=PF01368 from=15 to=91 evalue=5.3e-09 interpro_id=IPR001667 interpro_description=Phosphoesterase, RecJ-like GO=Molecular Function: hydrolase activity (GO:0016787), Molecular Function: manganese ion binding (GO:0030145))
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] alias=ACD12_C00001G00001,ACD12_52007.14463.14G0001,ACD12_52007.14463.14_1 id=3565 tax=ACD12 species=Dehalogenimonas lykanthroporepellens genus=Dehalogenimonas taxon_order=unknown taxon_class=Dehalococcoidetes phylum=Chloroflexi organism_group=OP11 organism_desc=
ACD12_1_2

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comp(799..1728)
DNA (930bp) protein (310aa)
hypothetical protein
Putative DNA recombination protein n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVA7_9BACT (db=UNIREF evalue=6.0e-48 bit_score=194.0 identity=40.46 coverage=83.8709677419355)
seg (db=Seg db_id=seg from=279 to=288)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
ACD12_1_3

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comp(1736..2683)
DNA (948bp) protein (316aa)
exopolyphosphatase-like protein
seg (db=Seg db_id=seg from=182 to=193)
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=19 to=240 evalue=2.7e-17)
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=150 to=263 evalue=8.1e-13)
ACD12_1_4

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comp(2689..4143)
DNA (1455bp) protein (485aa)
translation initiation factor IF-2
translation initiation factor IF-2
Translation initiation factor IF-2 (Fragment) n=2 Tax=Selenomonas RepID=C4V3N4_9FIRM (db=UNIREF evalue=2.0e-86 bit_score=323.0 identity=38.66 coverage=98.7628865979381)
seg (db=Seg db_id=seg from=389 to=396)
ACD12_1_5

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comp(4250..5293)
DNA (1044bp) protein (348aa)
hypothetical protein
seg (db=Seg db_id=seg from=35 to=50)
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
NusA: transcription termination factor NusA (db=HMMTigr db_id=TIGR01953 from=7 to=316 evalue=1.8e-111 interpro_id=IPR010213 interpro_description=Transcription termination factor NusA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: transcription regulator activity (GO:0030528))
ACD12_1_6

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comp(5311..6063)
DNA (753bp) protein (251aa)
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
seg (db=Seg db_id=seg from=225 to=250)
Ribosomal protein L25-like (db=superfamily db_id=SSF50715 from=11 to=200 evalue=5.0e-40 interpro_id=IPR011035 interpro_description=Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO=Biological Process: translation (GO:0006412))
ctc_TL5: ribosomal protein L25, Ctc-form (db=HMMTigr db_id=TIGR00731 from=15 to=191 evalue=4.8e-29 interpro_id=IPR001021 interpro_description=Ribosomal protein L25 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: 5S rRNA binding (GO:0008097))
ACD12_1_7

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comp(6107..8347)
DNA (2241bp) protein (747aa)
GDP-mannose 4,6 dehydratase ISS
transmembrane_regions (db=TMHMM db_id=tmhmm from=157 to=179)
seg (db=Seg db_id=seg from=189 to=205)
seg (db=Seg db_id=seg from=36 to=46)
ACD12_1_8

Not on your lists

8464..8943
DNA (480bp) protein (160aa)
glycerol-3-phosphate cytidyltransferase TagD
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=23 to=157 evalue=4.5e-22 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=23 to=157 evalue=1.3e-21)
cyt_tran_rel: cytidyltransferase-related (db=HMMTigr db_id=TIGR00125 from=25 to=91 evalue=2.1e-17 interpro_id=IPR004821 interpro_description=Cytidyltransferase-related GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: biosynthetic process (GO:0009058))
ACD12_1_9

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9001..9510
DNA (510bp) protein (170aa)
seg (db=Seg db_id=seg from=91 to=105)
Uncharacterized protein {ECO:0000313|EMBL:EKE14207.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_1_10

Not on your lists

9571..9807
DNA (237bp) protein (79aa)
9571..9807 + (rbs_motif=TATAAT rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE14208.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_1_11

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comp(9870..10034)
DNA (165bp) protein (55aa)
9870..10034 - (rbs_motif=TAGTA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE14209.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_1_12

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comp(10071..10214)
DNA (144bp) protein (48aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Cenarchaeum symbiosum RepID=A0RXN7_CENSY (db=UNIREF evalue=1.0e-10 bit_score=68.6 identity=59.57 coverage=95.8333333333333)
Uncharacterized protein {ECO:0000313|EMBL:EKE14210.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_1_13

Not on your lists

comp(10272..10553)
DNA (282bp) protein (94aa)
seg (db=Seg db_id=seg from=69 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=89)
Uncharacterized protein {ECO:0000313|EMBL:EKE14195.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_1_14

Not on your lists

comp(10583..10849)
DNA (267bp) protein (89aa)
seg (db=Seg db_id=seg from=64 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=84)
Uncharacterized protein {ECO:0000313|EMBL:EKE14195.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_1_15

Not on your lists

10962..11408
DNA (447bp) protein (149aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KN22_9FIRM (db=UNIREF evalue=5.0e-13 bit_score=76.6 identity=42.2 coverage=66.4429530201342)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=21)
Uncharacterized protein {ECO:0000313|EMBL:EKE14196.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_1_16

Not on your lists

11451..12623
DNA (1173bp) protein (391aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=6 to=17)
DUF3048 (db=HMMPfam db_id=PF11258 from=76 to=379 evalue=2.2e-68 interpro_id=IPR021416 interpro_description=Protein of unknown function DUF3048)
ACD12_1_17

Not on your lists

12716..13291
DNA (576bp) protein (192aa)
Transcriptional regulator
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9G3_9ARCH (db=UNIREF evalue=5.0e-17 bit_score=90.5 identity=38.92 coverage=94.7916666666667)
seg (db=Seg db_id=seg from=121 to=145)
seg (db=Seg db_id=seg from=49 to=61)
ACD12_1_18

Not on your lists

13288..14499
DNA (1212bp) protein (404aa)
hypothetical protein
seg (db=Seg db_id=seg from=51 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=325 to=347)
transmembrane_regions (db=TMHMM db_id=tmhmm from=298 to=320)
Displaying 18 items

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