ggKbase home page

ACD12_11

Alias: ACD12_53700.13261.12

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_11_1

Not on your lists

comp(34..324)
DNA (291bp) protein (97aa)
seg (db=Seg db_id=seg from=5 to=23)
seg (db=Seg db_id=seg from=85 to=94)
Uncharacterized protein {ECO:0000313|EMBL:EKE14150.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_11_2

Not on your lists

comp(954..1295)
DNA (342bp) protein (114aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
seg (db=Seg db_id=seg from=48 to=68)
seg (db=Seg db_id=seg from=7 to=19)
Uncharacterized protein {ECO:0000313|EMBL:EKE14134.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_11_3

Not on your lists

comp(1344..1844)
DNA (501bp) protein (167aa)
protein of unknown function DUF421
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=74)
ACD12_11_4

Not on your lists

1883..2089
DNA (207bp) protein (69aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=18 to=34)
Uncharacterized protein {ECO:0000313|EMBL:EKE14136.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_11_5

Not on your lists

2095..2844
DNA (750bp) protein (250aa)
hypothetical protein
Outer membrane protein, 28kDa n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4F158_9RHOB (db=UNIREF evalue=5.0e-16 bit_score=88.2 identity=28.04 coverage=81.2)
seg (db=Seg db_id=seg from=109 to=128)
seg (db=Seg db_id=seg from=221 to=228)
ACD12_11_6

Not on your lists

comp(2847..4256)
DNA (1410bp) protein (470aa)
glycoside hydrolase family protein (db=KEGG evalue=1.0e-25 bit_score=121.0 identity=28.31 coverage=62.9787234042553)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
no description (db=Gene3D db_id=G3DSA:3.20.20.80 from=34 to=368 evalue=6.3e-33 interpro_id=IPR013781 interpro_description=Glycoside hydrolase, subgroup, catalytic core GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: cation binding (GO:0043169))
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=47 to=369 evalue=2.8e-32 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
family 39- plant degradation putatively kelly wrighton (11/14/12)
ACD12_11_7

Not on your lists

comp(4282..4545)
DNA (264bp) protein (88aa)
RelE-like (db=superfamily db_id=SSF143011 from=1 to=83 evalue=1.3e-13)
Uncharacterized protein {ECO:0000313|EMBL:EKE14139.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_11_8

Not on your lists

comp(4538..4804)
DNA (267bp) protein (89aa)
PhdYeFM (db=HMMPfam db_id=PF02604 from=9 to=72 evalue=2.3e-08 interpro_id=IPR006442 interpro_description=Prevent-host-death protein)
YefM-like (db=superfamily db_id=SSF143120 from=7 to=84 evalue=4.8e-07)
phd_fam: prevent-host-death family protein (db=HMMTigr db_id=TIGR01552 from=9 to=61 evalue=0.0036 interpro_id=IPR006442 interpro_description=Prevent-host-death protein)
Uncharacterized protein {ECO:0000313|EMBL:EKE14140.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_11_9

Not on your lists

comp(4846..5721)
DNA (876bp) protein (292aa)
seg (db=Seg db_id=seg from=184 to=203)
transmembrane_regions (db=TMHMM db_id=tmhmm from=268 to=285)
transmembrane_regions (db=TMHMM db_id=tmhmm from=149 to=171)
transmembrane_regions (db=TMHMM db_id=tmhmm from=184 to=206)
ACD12_11_10

Not on your lists

comp(5721..6251)
DNA (531bp) protein (177aa)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=3 to=176 evalue=1.7e-30)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=1 to=176 evalue=2.7e-24)
DUF1234 (db=HMMPfam db_id=PF06821 from=5 to=165 evalue=2.2e-17 interpro_id=IPR010662 interpro_description=Protein of unknown function DUF1234)
ACD12_11_11

Not on your lists

comp(6271..7140)
DNA (870bp) protein (290aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=198)
transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=227)
transmembrane_regions (db=TMHMM db_id=tmhmm from=237 to=259)
transmembrane_regions (db=TMHMM db_id=tmhmm from=268 to=285)
ACD12_11_12

Not on your lists

comp(7157..7549)
DNA (393bp) protein (131aa)
death on curing protein
DOC_P1: death-on-curing family protein (db=HMMTigr db_id=TIGR01550 from=4 to=123 evalue=1.6e-12 interpro_id=IPR006440 interpro_description=Death-on-curing protein)
Fic (db=HMMPfam db_id=PF02661 from=7 to=86 evalue=2.1e-11 interpro_id=IPR003812 interpro_description=Filamentation induced by cAMP/death on curing, related)
FIDO (db=ProfileScan db_id=PS51459 from=5 to=123 evalue=14.126)
ACD12_11_13

Not on your lists

comp(7546..7797)
DNA (252bp) protein (84aa)
SpoVT_AbrB (db=HMMPfam db_id=PF04014 from=8 to=37 evalue=3.8e-08 interpro_id=IPR007159 interpro_description=Transcription regulator AbrB/SpoV, predicted)
AbrB/MazE/MraZ-like (db=superfamily db_id=SSF89447 from=2 to=78 evalue=2.2e-07)
Uncharacterized protein {ECO:0000313|EMBL:EKE14145.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_11_14

Not on your lists

7922..9034
DNA (1113bp) protein (371aa)
aminopeptidase YpdF (EC:3.4.11.-)
Peptidase M24 n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQT0_9CLOT (db=UNIREF evalue=2.0e-53 bit_score=213.0 identity=35.85 coverage=95.9568733153639)
coiled-coil (db=Coil db_id=coil from=250 to=271 evalue=NA)
PROLINE_PEPTIDASE (db=PatternScan db_id=PS00491 from=297 to=309 evalue=0.0 interpro_id=IPR001131 interpro_description=Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site GO=Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
ACD12_11_15

Not on your lists

comp(9018..11537)
DNA (2520bp) protein (840aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=363 to=385)
transmembrane_regions (db=TMHMM db_id=tmhmm from=293 to=315)
transmembrane_regions (db=TMHMM db_id=tmhmm from=262 to=283)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=186)
ACD12_11_16

Not on your lists

comp(11534..12163)
DNA (630bp) protein (210aa)
seg (db=Seg db_id=seg from=15 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=206)
seg (db=Seg db_id=seg from=143 to=168)
seg (db=Seg db_id=seg from=107 to=118)
ACD12_11_17

Not on your lists

comp(12175..13299)
DNA (1125bp) protein (375aa)
SpoIID/LytB protein
SpoIID/LytB domain protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK55_9FIRM (db=UNIREF evalue=8.0e-14 bit_score=82.0 identity=36.57 coverage=33.6)
seg (db=Seg db_id=seg from=320 to=348)
seg (db=Seg db_id=seg from=23 to=41)
Displaying 17 items

View Taxonomy