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ACD12_14

Alias: ACD12_47595.4418.14

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_14_1

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3..104
DNA (102bp) protein (34aa)
3..104 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE14272.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_14_2

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comp(101..649)
DNA (549bp) protein (183aa)
dihydrofolate reductase region
seg (db=Seg db_id=seg from=98 to=119)
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=1 to=175 evalue=7.8e-28)
no description (db=Gene3D db_id=G3DSA:3.40.430.10 from=1 to=179 evalue=4.5e-17)
ACD12_14_3

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comp(646..1317)
DNA (672bp) protein (224aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=138)
transmembrane_regions (db=TMHMM db_id=tmhmm from=75 to=94)
seg (db=Seg db_id=seg from=3 to=16)
ACD12_14_4

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comp(1338..1643)
DNA (306bp) protein (102aa)
pyrophosphatase
seg (db=Seg db_id=seg from=88 to=101)
all-alpha NTP pyrophosphatases (db=superfamily db_id=SSF101386 from=1 to=101 evalue=1.6e-14)
hypothetical protein alias=ACD12_C00014G00004,ACD12_47595.4418.14G0004,ACD12_47595.4418.14_4 id=3685 tax=ACD12 species=Kribbella flavida genus=Kribbella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OP11 organism_desc=
ACD12_14_5

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comp(1662..2327)
DNA (666bp) protein (222aa)
ung; uracil-DNA glycosylase (EC:3.2.2.-)
U_DNA_GLYCOSYLASE (db=PatternScan db_id=PS00130 from=59 to=68 evalue=0.0 interpro_id=IPR018085 interpro_description=Uracil-DNA glycosylase, active site GO=Biological Process: DNA repair (GO:0006281), Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799))
ung: uracil-DNA glycosylase (db=HMMTigr db_id=TIGR00628 from=7 to=215 evalue=2.7e-111 interpro_id=IPR002043 interpro_description=Uracil-DNA glycosylase GO=Molecular Function: uracil DNA N-glycosylase activity (GO:0004844), Biological Process: base-excision repair (GO:0006284))
Uracil-DNA glycosylase-like (db=superfamily db_id=SSF52141 from=8 to=220 evalue=6.1e-88 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
ACD12_14_6

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comp(2433..3134)
DNA (702bp) protein (234aa)
hypothetical protein
Transposase IS200-like (db=superfamily db_id=SSF143422 from=3 to=161 evalue=9.0e-16)
Transposase_17 (db=HMMPfam db_id=PF01797 from=80 to=157 evalue=6.2e-09 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
hypothetical protein alias=ACD12_C00014G00006,ACD12_47595.4418.14G0006,ACD12_47595.4418.14_6 id=3687 tax=ACD12 species=Pseudoalteromonas haloplanktis genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=OP11 organism_desc=
ACD12_14_7

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comp(3287..3625)
DNA (339bp) protein (113aa)
seg (db=Seg db_id=seg from=76 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=87)
Displaying 7 items

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