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ACD12_24

Alias: ACD12_46793.10272.13

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_24_1

Not on your lists

comp(3..188)
DNA (186bp) protein (62aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=2 to=25 evalue=0.019 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKE14302.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_24_2

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comp(191..619)
DNA (429bp) protein (143aa)
seg (db=Seg db_id=seg from=51 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=4 to=27 evalue=0.0036 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKE14303.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_24_3

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comp(799..1311)
DNA (513bp) protein (171aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=34 to=55 evalue=NA)
Pili subunits (db=superfamily db_id=SSF54523 from=5 to=55 evalue=1.9e-09)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=2 to=25 evalue=0.0028 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD12_24_4

Not on your lists

comp(1308..1748)
DNA (441bp) protein (147aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=8 to=29)
Pili subunits (db=superfamily db_id=SSF54523 from=7 to=137 evalue=1.3e-19)
BCTERIALGSPG (db=FPrintScan db_id=PR00813 from=6 to=31 evalue=2.1e-08 interpro_id=IPR000983 interpro_description=Bacterial general secretion pathway protein G GO=Molecular Function: protein transporter activity (GO:0008565), Cellular Component: type II protein secretion system complex (GO:0015627), Biological Process: protein secretion by the type II secretion system (GO:0015628))
ACD12_24_5

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comp(1754..2125)
DNA (372bp) protein (124aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=5 to=25 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
Pili subunits (db=superfamily db_id=SSF54523 from=7 to=107 evalue=2.7e-20)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=4 to=27 evalue=1.0e-07 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD12_24_6
GWC2_OP11_ACD12-rel_34_23, Roizmanbacteria, Microgenomates, Bacteria

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2293..3003
DNA (711bp) protein (237aa)
glycosyl transferase group 1
Putative glycosyltransferase n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC6_9BACT (db=UNIREF evalue=1.0e-35 bit_score=153.0 identity=39.32 coverage=91.9831223628692)
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=2 to=232 evalue=3.1e-38)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=232 evalue=3.1e-38)
ACD12_24_7

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3188..3532
DNA (345bp) protein (115aa)
glycosyl transferase group 1
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=1 to=113 evalue=9.4e-27)
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=1 to=113 evalue=9.4e-27)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=112 evalue=1.8e-24)
ACD12_24_8
GWC2_OP11_ACD12-rel_34_23, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

3623..3787
DNA (165bp) protein (55aa)
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=3 to=44 evalue=4.8e-09)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=3 to=44 evalue=4.8e-09)
Glycos_transf_1 (db=HMMPfam db_id=PF00534 from=4 to=45 evalue=5.4e-08 interpro_id=IPR001296 interpro_description=Glycosyl transferase, group 1 GO=Biological Process: biosynthetic process (GO:0009058))
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=3 to=46 evalue=1.8e-06)
ACD12_24_9

Not on your lists

3798..4004
DNA (207bp) protein (69aa)
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=3 to=67 evalue=2.1e-07)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=3 to=67 evalue=2.1e-07)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=66 evalue=2.3e-07)
Uncharacterized protein {ECO:0000313|EMBL:EKE14297.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_24_10

Not on your lists

4220..5098
DNA (879bp) protein (293aa)
formamidopyrimidine-DNA glycosylase Fpg
seg (db=Seg db_id=seg from=18 to=28)
ZF_FPG_1 (db=PatternScan db_id=PS01242 from=262 to=286 evalue=0.0 interpro_id=IPR015887 interpro_description=DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799))
fpg: formamidopyrimidine-DNA glycosylase (db=HMMTigr db_id=TIGR00577 from=1 to=286 evalue=1.6e-65 interpro_id=IPR000191 interpro_description=DNA glycosylase/AP lyase GO=Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidized purine base lesion DNA N-glycosylase activity (GO:0008534))
ACD12_24_11
ACD12, ACD12, ACD12, ACD12, Microgenomates, Bacteria

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5043..5321
DNA (279bp) protein (93aa)
5043..5321 + (rbs_motif=TATTA rbs_spacer=15bp)
ACD12_24_12

Not on your lists

comp(5400..5777)
DNA (378bp) protein (126aa)
multidrug ABC transporter substrate-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
seg (db=Seg db_id=seg from=58 to=77)
ACD12_24_13

Not on your lists

5855..6070
DNA (216bp) protein (72aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
Uncharacterized protein {ECO:0000313|EMBL:EKE14294.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_24_14

Not on your lists

6196..6579
DNA (384bp) protein (128aa)
seg (db=Seg db_id=seg from=86 to=98)
Uncharacterized protein {ECO:0000313|EMBL:EKE14292.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_24_15

Not on your lists

comp(6772..7440)
DNA (669bp) protein (223aa)
ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=144 to=158 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=2 to=222 evalue=1.8e-100)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=222 evalue=1.8e-100)
ACD12_24_16
GWA2_OP11_ACD12_33_33, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(7433..8389)
DNA (957bp) protein (319aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLV3_9FIRM (db=UNIREF evalue=5.0e-17 bit_score=92.0 identity=25.93 coverage=90.5956112852665)
hypothetical protein
seg (db=Seg db_id=seg from=2 to=13)
RND_mfp: efflux transporter, RND family, MFP (db=HMMTigr db_id=TIGR01730 from=13 to=318 evalue=1.6e-21 interpro_id=IPR006143 interpro_description=Secretion protein HlyD GO=Molecular Function: protein transporter activity (GO:0008565), Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020))
ACD12_24_17
GWA2_OP11_ACD12_33_33, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(8355..8558)
DNA (204bp) protein (68aa)
seg (db=Seg db_id=seg from=11 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=24)
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KKP51649.1}; TaxID=1618476 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_33_33.;"
ACD12_24_18

Not on your lists

comp(8570..9463)
DNA (894bp) protein (298aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=264 to=283)
transmembrane_regions (db=TMHMM db_id=tmhmm from=220 to=237)
transmembrane_regions (db=TMHMM db_id=tmhmm from=191 to=213)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
ACD12_24_19

Not on your lists

9588..10310
DNA (723bp) protein (241aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=229)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=186)
transmembrane_regions (db=TMHMM db_id=tmhmm from=117 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
Displaying 19 items

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