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ACD12_35

Alias: ACD12_16998.19771.13

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_35_1

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comp(3..278)
DNA (276bp) protein (92aa)
ribonucleoside-diphosphate reductase
seg (db=Seg db_id=seg from=44 to=55)
PFL-like glycyl radical enzymes (db=superfamily db_id=SSF51998 from=1 to=90 evalue=1.7e-16)
Ribonuc_red_lgN (db=HMMPfam db_id=PF00317 from=2 to=78 evalue=2.9e-16 interpro_id=IPR013509 interpro_description=Ribonucleotide reductase large subunit, N-terminal GO=Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260), Biological Process: oxidation reduction (GO:0055114))
ACD12_35_2

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comp(280..744)
DNA (465bp) protein (155aa)
ATP-cone domain protein
coiled-coil (db=Coil db_id=coil from=81 to=105 evalue=NA)
TIGR00244: transcriptional regulator NrdR (db=HMMTigr db_id=TIGR00244 from=1 to=147 evalue=1.6e-56 interpro_id=IPR003796 interpro_description=Ribonucleotide reductase regulator NrdR-like)
ATP-cone (db=HMMPfam db_id=PF03477 from=50 to=134 evalue=2.6e-18 interpro_id=IPR005144 interpro_description=ATP-cone)
ACD12_35_3

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1679..2662
DNA (984bp) protein (328aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=241 to=263)
transmembrane_regions (db=TMHMM db_id=tmhmm from=283 to=317)
seg (db=Seg db_id=seg from=31 to=45)
ACD12_35_4

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2720..4066
DNA (1347bp) protein (449aa)
hypothetical protein
seg (db=Seg db_id=seg from=3 to=16)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=448 evalue=3.2e-25)
no description (db=Gene3D db_id=G3DSA:3.50.50.60 from=1 to=448 evalue=2.8e-14)
ACD12_35_5

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4078..4965
DNA (888bp) protein (296aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVF6_9EURY (db=UNIREF evalue=5.0e-34 bit_score=148.0 identity=32.77 coverage=92.5675675675676)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=1 to=292 evalue=5.1e-17)
DUF1749 (db=HMMPfam db_id=PF08538 from=99 to=290 evalue=9.0e-15 interpro_id=IPR013744 interpro_description=Protein of unknown function DUF1749)
ACD12_35_6

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4962..5552
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DFZ3_9EURY (db=UNIREF evalue=6.0e-23 bit_score=110.0 identity=33.53 coverage=82.741116751269)
YdeN-like protein
seg (db=Seg db_id=seg from=176 to=187)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=3 to=192 evalue=1.0e-30)
ACD12_35_7

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comp(5549..6157)
DNA (609bp) protein (203aa)
hypothetical protein
GPI (db=HMMPfam db_id=PF06560 from=45 to=187 evalue=1.0e-19 interpro_id=IPR010551 interpro_description=Glucose-6-phosphate isomerase, prokaryote GO=Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347), Cellular Component: cytoplasm (GO:0005737), Biological Process: gluconeogenesis (GO:0006094), Biological Process: glycolysis (GO:0006096))
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=9 to=189 evalue=4.3e-15 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=48 to=189 evalue=4.2e-09 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
ACD12_35_8

Not on your lists

comp(6162..6605)
DNA (444bp) protein (148aa)
cupin domain-containing protein
RmlC-like cupins (db=superfamily db_id=SSF51182 from=7 to=128 evalue=6.6e-13 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
MannoseP_isomer (db=HMMPfam db_id=PF01050 from=4 to=128 evalue=1.5e-07 interpro_id=IPR001538 interpro_description=Mannose-6-phosphate isomerase, type II, C-terminal GO=Biological Process: polysaccharide metabolic process (GO:0005976), Molecular Function: nucleotidyltransferase activity (GO:0016779))
cupin domain-containing protein alias=ACD12_16998.19771.13G0008,ACD12_16998.19771.13_8,ACD12_C00035G00008 id=3856 tax=ACD12 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OP11 organism_desc=
ACD12_35_9

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6648..7568
DNA (921bp) protein (307aa)
4-hydroxybenzoate polyprenyltransferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=224)
seg (db=Seg db_id=seg from=97 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=286 to=305)
ACD12_35_10

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7587..8621
DNA (1035bp) protein (345aa)
Protein recA n=2 Tax=Clostridium RepID=B8I7D2_CLOCE (db=UNIREF evalue=3.0e-115 bit_score=418.0 identity=63.41 coverage=91.304347826087)
recA; recA protein
recA; recA protein
seg (db=Seg db_id=seg from=6 to=14)
ACD12_35_11

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8743..9219
DNA (477bp) protein (159aa)
regulatory protein RecX
RecX (db=HMMPfam db_id=PF02631 from=40 to=153 evalue=2.3e-23 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
RecX (db=HAMAP db_id=MF_01114 from=3 to=158 evalue=13.7)
regulatory protein RecX; K03565 regulatory protein alias=ACD12_16998.19771.13G0011,ACD12_16998.19771.13_11,ACD12_C00035G00011 id=3860 tax=ACD12 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown organism_group=OP11 organism_desc=
ACD12_35_12

Not on your lists

9395..10819
DNA (1425bp) protein (475aa)
hypothetical protein
hypothetical protein
HDIG/KH domain protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYX7_9FIRM (db=UNIREF evalue=3.0e-101 bit_score=372.0 identity=44.2 coverage=93.6842105263158)
coiled-coil (db=Coil db_id=coil from=59 to=105 evalue=NA)
ACD12_35_13

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11109..11381
DNA (273bp) protein (91aa)
yonN; DNA-binding protein HU 2
seg (db=Seg db_id=seg from=11 to=22)
HISTONE_LIKE (db=PatternScan db_id=PS00045 from=46 to=65 evalue=0.0 interpro_id=IPR020816 interpro_description=Histone-like DNA-binding protein, conserved site GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00411 from=1 to=90 evalue=8.7e-40 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
ACD12_35_14

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11453..12007
DNA (555bp) protein (185aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=137 to=158 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE15112.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_35_15

Not on your lists

comp(11967..12533)
DNA (567bp) protein (189aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=164 to=175)
seg (db=Seg db_id=seg from=17 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=170 to=187)
ACD12_35_16

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13220..14320
DNA (1101bp) protein (367aa)
class V aminotransferase
class V aminotransferase
Phosphoserine aminotransferase / L-aspartate aminotransferase n=5 Tax=Dehalococcoides RepID=A5FRL8_DEHSB (db=UNIREF evalue=2.0e-88 bit_score=329.0 identity=45.66 coverage=96.4577656675749)
seg (db=Seg db_id=seg from=114 to=132)
L-aspartate to oxaloacetate Jill Banfield (11/14/12)
ACD12_35_17

Not on your lists

14363..15253
DNA (891bp) protein (297aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D_2_HYDROXYACID_DH_2 (db=PatternScan db_id=PS00670 from=181 to=203 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
D_2_HYDROXYACID_DH_3 (db=PatternScan db_id=PS00671 from=210 to=226 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
D_2_HYDROXYACID_DH_1 (db=PatternScan db_id=PS00065 from=143 to=170 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
ACD12_35_18

Not on your lists

15255..16112
DNA (858bp) protein (286aa)
Putative uncharacterized protein n=1 Tax=Bacillus cereus 95/8201 RepID=C2TQQ5_BACCE (db=UNIREF evalue=5.0e-19 bit_score=98.6 identity=27.34 coverage=84.965034965035)
hypothetical protein
ParB/Sulfiredoxin (db=superfamily db_id=SSF110849 from=6 to=253 evalue=1.7e-22 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
ParBc (db=HMMPfam db_id=PF02195 from=23 to=90 evalue=4.8e-08 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
ACD12_35_19

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comp(16134..16343)
DNA (210bp) protein (70aa)
16134..16343 - (rbs_motif=TAGTA rbs_spacer=14bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15098.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_35_20

Not on your lists

16404..16715
DNA (312bp) protein (104aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
seg (db=Seg db_id=seg from=12 to=26)
MscL (db=HMMPfam db_id=PF01741 from=1 to=100 evalue=1.1e-18 interpro_id=IPR001185 interpro_description=Large-conductance mechanosensitive channel GO=Molecular Function: ion channel activity (GO:0005216), Biological Process: transport (GO:0006810), Cellular Component: integral to membrane (GO:0016021))
ACD12_35_21

Not on your lists

comp(16652..17953)
DNA (1302bp) protein (434aa)
putative integral membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=324 to=339)
seg (db=Seg db_id=seg from=2 to=25)
ACD12_35_22
GWC1_OP11_37_12, Roizmanbacteria, Microgenomates, Bacteria

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17977..19170
DNA (1194bp) protein (398aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase n=1 Tax=cyanobacterium UCYN-A RepID=D3EQM4_UCYNA (db=UNIREF evalue=3.0e-11 bit_score=73.6 identity=32.16 coverage=40.7035175879397)
transmembrane_regions (db=TMHMM db_id=tmhmm from=293 to=315)
transmembrane_regions (db=TMHMM db_id=tmhmm from=320 to=339)
ACD12_35_23

Not on your lists

19202..19438
DNA (237bp) protein (79aa)
19202..19438 + (rbs_motif=TATA rbs_spacer=8bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15093.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_35_24

Not on your lists

19472..19807
DNA (336bp) protein (112aa)
smpB; SsrA-binding protein
ssra-binding protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744378 (db=UNIREF evalue=2.0e-13 bit_score=77.8 identity=44.55 coverage=97.3214285714286)
seg (db=Seg db_id=seg from=76 to=90)
SSRP (db=PatternScan db_id=PS01317 from=20 to=32 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
Displaying 24 items

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