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ACD12_39

Alias: ACD12_29749.8557.12

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_39_1

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comp(3..290)
DNA (288bp) protein (96aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5QYA2_9FIRM (db=UNIREF evalue=2.0e-17 bit_score=91.3 identity=47.92 coverage=98.9583333333333)
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (db=HMMPanther db_id=PTHR11252 from=1 to=96 evalue=9.2e-19 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=41 to=96 evalue=2.3e-15 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD12_39_2

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624..863
DNA (240bp) protein (80aa)
624..863 + (rbs_motif=TAA rbs_spacer=7bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE14647.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_39_3

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comp(2232..2642)
DNA (411bp) protein (137aa)
rpsO; 30S ribosomal protein S15
seg (db=Seg db_id=seg from=2 to=43)
RIBOSOMAL_S15 (db=PatternScan db_id=PS00362 from=86 to=116 evalue=0.0 interpro_id=IPR000589 interpro_description=Ribosomal protein S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S15 (db=HMMPanther db_id=PTHR23321:SF10 from=52 to=135 evalue=2.1e-36 interpro_id=IPR005290 interpro_description=Ribosomal protein S15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD12_39_4

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comp(2603..2884)
DNA (282bp) protein (94aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=43)
seg (db=Seg db_id=seg from=84 to=93)
seg (db=Seg db_id=seg from=10 to=27)
ACD12_39_5

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3154..3465
DNA (312bp) protein (104aa)
3154..3465 + (rbs_motif=TATA rbs_spacer=8bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE14644.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_39_6
GWC2_OP11_ACD12-rel_34_23, Roizmanbacteria, Microgenomates, Bacteria

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3514..3957
DNA (444bp) protein (148aa)
methionyl-tRNA synthetase
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=12 to=23 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
tRNA-synt_1g (db=HMMPfam db_id=PF09334 from=5 to=139 evalue=3.6e-40 interpro_id=IPR015413 interpro_description=Aminoacyl-tRNA synthetase, class I (M) GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=1 to=139 evalue=9.5e-36)
ACD12_39_7

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5354..6055
DNA (702bp) protein (234aa)
aspartate racemase
seg (db=Seg db_id=seg from=100 to=112)
ASP_GLU_RACEMASE_2 (db=PatternScan db_id=PS00924 from=195 to=205 evalue=0.0 interpro_id=IPR018187 interpro_description=Asp/Glu racemase, active site GO=Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives (GO:0016855))
asp_race: aspartate racemase (db=HMMTigr db_id=TIGR00035 from=3 to=233 evalue=1.3e-37 interpro_id=IPR004380 interpro_description=Aspartate racemase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives (GO:0016855))
ACD12_39_8

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6114..8327
DNA (2214bp) protein (738aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=37)
seg (db=Seg db_id=seg from=27 to=39)
seg (db=Seg db_id=seg from=10 to=21)
ACD12_39_9

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8420..8593
DNA (174bp) protein (58aa)
Trp_repressor (db=HMMPfam db_id=PF01371 from=5 to=57 evalue=1.0e-10 interpro_id=IPR000831 interpro_description=Trp repressor GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
TrpR-like (db=superfamily db_id=SSF48295 from=1 to=58 evalue=2.5e-07 interpro_id=IPR010921 interpro_description=Trp repressor/replication initiator GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Uncharacterized protein {ECO:0000313|EMBL:EKE14643.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 9 items

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