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ACD12_179

Alias: ACD12_157571.2191.4

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_179_1

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comp(3..470)
DNA (468bp) protein (156aa)
ribosomal protein S3, bacterial type
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=2 to=113 evalue=4.1e-29 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=156 evalue=1.5e-25 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=17 to=114 evalue=1.1e-21 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)
ACD12_179_2

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comp(470..817)
DNA (348bp) protein (116aa)
50S ribosomal protein L22
Ribosomal protein L22 n=23 Tax=Candidatus Phytoplasma RepID=A5YRG5_FLADO (db=UNIREF evalue=2.0e-10 bit_score=68.2 identity=37.76 coverage=82.7586206896552)
seg (db=Seg db_id=seg from=2 to=14)
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=2 to=110 evalue=1.9e-20 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD12_179_3
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

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comp(819..1121)
DNA (303bp) protein (101aa)
30S ribosomal protein s19
seg (db=Seg db_id=seg from=14 to=25)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=89 evalue=1.5e-50 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD12_179_4

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1554..1682
DNA (129bp) protein (43aa)
1554..1682 + (rbs_motif=AAT rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15170.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_179_5

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comp(1981..2223)
DNA (243bp) protein (81aa)
seg (db=Seg db_id=seg from=37 to=57)
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=2 to=64 evalue=1.7e-09 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=2 to=62 evalue=5.1e-09 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=2 to=63 evalue=4.0e-07 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
Displaying 5 items

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