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ACD12_244

Alias: ACD12_10853.17030.13

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_244_1

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comp(116..1954)
DNA (1839bp) protein (613aa)
hypothetical protein
hypothetical protein
Small GTP-binding protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT16_9BACT (db=UNIREF evalue=8.0e-168 bit_score=594.0 identity=50.74 coverage=97.7161500815661)
seg (db=Seg db_id=seg from=113 to=135)
ACD12_244_2

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2044..2814
DNA (771bp) protein (257aa)
seg (db=Seg db_id=seg from=72 to=96)
Uncharacterized protein {ECO:0000313|EMBL:EKE15418.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_244_3

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comp(2773..3513)
DNA (741bp) protein (247aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=4 to=16)
Uncharacterized protein {ECO:0000313|EMBL:EKE15419.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_244_4

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comp(3574..4014)
DNA (441bp) protein (147aa)
seg (db=Seg db_id=seg from=73 to=84)
seg (db=Seg db_id=seg from=8 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
Uncharacterized protein {ECO:0000313|EMBL:EKE15420.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_244_5

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comp(4017..4394)
DNA (378bp) protein (126aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=106)
seg (db=Seg db_id=seg from=24 to=44)
seg (db=Seg db_id=seg from=55 to=65)
ACD12_244_6

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comp(4397..4813)
DNA (417bp) protein (139aa)
sigma-70 family RNA polymerase sigma factor
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=1 to=134 evalue=9.5e-18 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=77 evalue=1.4e-12 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=2 to=59 evalue=2.5e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD12_244_7
OP11_GWA2_32_13, Roizmanbacteria, Microgenomates, Bacteria

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comp(4759..5070)
DNA (312bp) protein (104aa)
RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily (db=KEGG evalue=1.0e-08 bit_score=62.0 identity=31.08 coverage=68.2692307692308)
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=75 evalue=6.6e-12 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=25 to=75 evalue=2.6e-08 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=8 to=76 evalue=2.9e-08)
ACD12_244_8

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5093..5962
DNA (870bp) protein (290aa)
GTP-binding protein Era
GTP-BINDING PROTEIN ERA (db=HMMPanther db_id=PTHR11649:SF3 from=1 to=286 evalue=3.8e-52)
MSS1/TRME-RELATED GTP-BINDING PROTEIN (db=HMMPanther db_id=PTHR11649 from=1 to=286 evalue=3.8e-52)
era: GTP-binding protein Era (db=HMMTigr db_id=TIGR00436 from=4 to=279 evalue=5.3e-49 interpro_id=IPR005662 interpro_description=GTP-binding protein Era GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622))
ACD12_244_9

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6007..7473
DNA (1467bp) protein (489aa)
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase (db=HMMPIR db_id=PIRSF000485 from=20 to=487 evalue=4.9e-214 interpro_id=IPR005854 interpro_description=Amidophosphoribosyl transferase GO=Molecular Function: amidophosphoribosyltransferase activity (GO:0004044), Biological Process: purine base biosynthetic process (GO:0009113))
purF: amidophosphoribosyltransferase (db=HMMTigr db_id=TIGR01134 from=31 to=472 evalue=2.4e-196 interpro_id=IPR005854 interpro_description=Amidophosphoribosyl transferase GO=Molecular Function: amidophosphoribosyltransferase activity (GO:0004044), Biological Process: purine base biosynthetic process (GO:0009113))
AMIDOPHOSPHORIBOSYLTRANSFERASE (db=HMMPanther db_id=PTHR11907 from=1 to=488 evalue=2.0e-191 interpro_id=IPR005854 interpro_description=Amidophosphoribosyl transferase GO=Molecular Function: amidophosphoribosyltransferase activity (GO:0004044), Biological Process: purine base biosynthetic process (GO:0009113))
ACD12_244_10

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7451..8080
DNA (630bp) protein (210aa)
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
seg (db=Seg db_id=seg from=43 to=56)
Formyltransferase (db=superfamily db_id=SSF53328 from=12 to=209 evalue=5.5e-34 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
Formyl_trans_N (db=HMMPfam db_id=PF00551 from=12 to=203 evalue=6.8e-32 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
ACD12_244_11

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8189..9478
DNA (1290bp) protein (430aa)
Phosphoribosylamine/glycine ligase n=1 Tax=Thermincola sp. JR RepID=D5XD50_9FIRM (db=UNIREF evalue=7.0e-122 bit_score=441.0 identity=50.95 coverage=97.2093023255814)
phosphoribosylamine/glycine ligase (EC:6.3.4.13)
phosphoribosylamine/glycine ligase (EC:6.3.4.13)
seg (db=Seg db_id=seg from=308 to=324)
ACD12_244_12

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9471..12323
DNA (2853bp) protein (951aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=4 Tax=Methanococcus maripaludis RepID=A4G009_METM5 (db=UNIREF evalue=0.0 bit_score=1031.0 identity=55.84 coverage=97.8969505783386)
seg (db=Seg db_id=seg from=895 to=910)
ACD12_244_13

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12451..13218
DNA (768bp) protein (256aa)
phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain protein
Phosphoribosylformylglycinamidine synthase I (db=HMMPIR db_id=PIRSF001586 from=3 to=255 evalue=4.2e-98 interpro_id=IPR010075 interpro_description=Phosphoribosylformylglycinamidine synthase I GO=Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642), Cellular Component: cytoplasm (GO:0005737), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=1 to=255 evalue=3.0e-61)
PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE (db=HMMPanther db_id=PTHR10099 from=3 to=255 evalue=9.3e-51)
ACD12_244_14

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13221..14213
DNA (993bp) protein (331aa)
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase n=1 Tax=Pyrococcus horikoshii RepID=PURP_PYRHO (db=UNIREF evalue=2.0e-83 bit_score=313.0 identity=51.79 coverage=97.2809667673716)
seg (db=Seg db_id=seg from=58 to=74)
ACD12_244_15

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14332..15453
DNA (1122bp) protein (374aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos27E6 RepID=Q64BC7_9ARCH (db=UNIREF evalue=1.0e-111 bit_score=406.0 identity=54.99 coverage=98.3957219251337)
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
seg (db=Seg db_id=seg from=210 to=221)
ACD12_244_16

Not on your lists

15453..16853
DNA (1401bp) protein (467aa)
adenylosuccinate lyase
adenylosuccinate lyase
Adenylosuccinate lyase n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MRC6_ANATD (db=UNIREF evalue=5.0e-93 bit_score=345.0 identity=41.69 coverage=95.5032119914347)
seg (db=Seg db_id=seg from=61 to=78)
ACD12_244_17

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16872..17066
DNA (195bp) protein (65aa)
purE; phosphoribosylaminoimidazole carboxylase (EC:4.1.1.21)
PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE CATALYTIC SUBUNIT (db=HMMPanther db_id=PTHR23046 from=1 to=65 evalue=1.6e-20 interpro_id=IPR000031 interpro_description=1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase GO=Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
AIRC (db=HMMPfam db_id=PF00731 from=6 to=65 evalue=7.2e-20 interpro_id=IPR000031 interpro_description=1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase GO=Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) (db=superfamily db_id=SSF52255 from=2 to=65 evalue=6.7e-18 interpro_id=IPR000031 interpro_description=1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase GO=Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
Displaying 17 items

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