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ACD12_266

Alias: ACD12_56690.2131.5

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Displaying 4 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_266_1
GWC2_OD1_38_7, Parcubacteria, Bacteria

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1..576
DNA (576bp) protein (192aa)
DNA polymerase IV
Lesion bypass DNA polymerase (Y-family), little finger domain (db=superfamily db_id=SSF100879 from=34 to=134 evalue=2.7e-20 interpro_id=IPR017961 interpro_description=DNA polymerase, Y-family, little finger domain GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA repair (GO:0006281))
DNA POLYMERASE IV / KAPPA (db=HMMPanther db_id=PTHR11076:SF12 from=3 to=170 evalue=1.2e-19)
DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR11076 from=3 to=170 evalue=1.2e-19 interpro_id=IPR001126 interpro_description=DNA-repair protein, UmuC-like GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA repair (GO:0006281))
ACD12_266_2
GWC2_OD1_38_7, Parcubacteria, Bacteria

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777..1763
DNA (987bp) protein (329aa)
[NiFe] hydrogenase, betsubunit A
seg (db=Seg db_id=seg from=312 to=325)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=220 to=231 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=298 to=309 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
perhaps c-terminal, keep for tree kelly wrighton (12/12/12)
unlikely hydrogenase kelly wrighton (11/15/12)
ACD12_266_3
GWC2_OD1_38_7, Parcubacteria, Bacteria

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1750..2103
DNA (354bp) protein (118aa)
seg (db=Seg db_id=seg from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Tax=GWC2_OD1_38_7
ACD12_266_4
ACD12, ACD12, ACD12, ACD12, Microgenomates, Bacteria

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2106..2165
DNA (60bp) protein (20aa)
2106..2165 + (rbs_motif=ATA rbs_spacer=3bp)
Displaying 4 items

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