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ACD37_160

Alias: ACD37_63129.2225.8

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD37_160_1
GWC2_WWE3_41_23, WWE3, Bacteria

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1..213
DNA (213bp) protein (71aa)
seg (db=Seg db_id=seg from=39 to=67)
coiled-coil (db=Coil db_id=coil from=49 to=70 evalue=NA)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413:SF3 from=1 to=64 evalue=3.9e-13)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=1 to=64 evalue=3.9e-13 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD37_160_2
RIFOXYC1_FULL_WWE3_42_17_curated, WWE3, Bacteria

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203..625
DNA (423bp) protein (141aa)
rplM; 50S ribosomal protein L13
seg (db=Seg db_id=seg from=50 to=59)
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=5 to=139 evalue=5.5e-53 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L13 (db=HMMPfam db_id=PF00572 from=16 to=138 evalue=2.7e-46 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD37_160_3
GWC2_WWE3_41_23, WWE3, Bacteria

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628..1062
DNA (435bp) protein (145aa)
hypothetical protein
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=15 to=144 evalue=3.7e-37 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Ribosomal_S9 (db=HMMPfam db_id=PF00380 from=21 to=144 evalue=7.6e-36 interpro_id=IPR000754 interpro_description=Ribosomal protein S9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=14 to=144 evalue=4.3e-34 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
ACD37_160_4
RIFOXYC1_FULL_WWE3_42_17_curated, WWE3, Bacteria

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comp(1059..1334)
DNA (276bp) protein (92aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=66 evalue=4.7e-11 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
HTH_3 (db=HMMPfam db_id=PF01381 from=8 to=61 evalue=5.3e-10 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=7 to=62 evalue=9.3e-09 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=4 to=66 evalue=1.4e-08)
ACD37_160_5

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1397..2086
DNA (690bp) protein (230aa)
radC; DNA repair protein RadC
UPF0758 (db=PatternScan db_id=PS01302 from=172 to=177 evalue=0.0 interpro_id=IPR020891 interpro_description=Uncharacterised protein family, RadC-like, conserved site)
radc: DNA repair protein RadC (db=HMMTigr db_id=TIGR00608 from=11 to=223 evalue=5.6e-70 interpro_id=IPR001405 interpro_description=Uncharacterised protein family, RadC-like)
DUF2466 (db=HMMPfam db_id=PF04002 from=102 to=223 evalue=4.8e-42 interpro_id=IPR001405 interpro_description=Uncharacterised protein family, RadC-like)
ACD37_160_6
GWC2_WWE3_41_23, WWE3, Bacteria

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2083..2259
DNA (177bp) protein (59aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=7 to=18)
Uncharacterized protein {ECO:0000313|EMBL:KKS03488.1}; TaxID=1619123 species="Bacteria; candidate division WWE3.;" source="candidate division WWE3 bacterium GW2011_GWC2_41_23.;"
hypothetical protein
Displaying 6 items

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